View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_31 (Length: 334)
Name: NF4115_low_31
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 78 - 326
Target Start/End: Complemental strand, 45314168 - 45313934
Alignment:
| Q |
78 |
cgaatatggaaggtggtagcagcgaagaagatccattcgtatatcaacttcccaacaagaacttgccaacaccgttcctcacttcaccgtgcaactgcaa |
177 |
Q |
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| T |
45314168 |
cgaatatggaaggtggtagcagcgaagaagatccattcgtatatcaacttcccaaca--------------ccgttactcacttcaccgtgcaactgcaa |
45314083 |
T |
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| Q |
178 |
caacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttcacact |
277 |
Q |
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| T |
45314082 |
caacaacaacctccaccaccatcaccagttcatccctcccgtcatcctcttgtccgctccagacacccagcacgtcgataaccaagacgtttttcacact |
45313983 |
T |
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| Q |
278 |
ccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatg |
326 |
Q |
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| T |
45313982 |
ccgccggatgacccaccgcttccatcttccgtcattgatgttgttgatg |
45313934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 45314232 - 45314189
Alignment:
| Q |
17 |
atgaaagtaaaaaagaggattgggtaagttattcttattcttct |
60 |
Q |
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| T |
45314232 |
atgaaagtaaaaaagaggattgggtaagttattcttattcttct |
45314189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 316
Target Start/End: Original strand, 54631183 - 54631353
Alignment:
| Q |
155 |
ctcacttcaccgtgcaactgcaacaacaacaacctccaccaccat--cacc-------agttcatccctcccgtcatcctcttgtccgctccagacaccc |
245 |
Q |
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| T |
54631183 |
ctcacttcaccctgcaactgcaacaacaacaaccaccaccacgatgccaccgccgccgagatcatccctcccatcatcccattgtacgctccagacaccc |
54631282 |
T |
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| Q |
246 |
agcacgtcgataaccaagacgtttttcacactccgccggatgacccaccgcttccatcttccgtcattgat |
316 |
Q |
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| T |
54631283 |
agcacgtcgataaccaagacgtttttcacactccgccggaggacccaccgcttccatcttccgtcattgat |
54631353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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