View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_32 (Length: 325)
Name: NF4115_low_32
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7423029 - 7422722
Alignment:
| Q |
1 |
tggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgata |
100 |
Q |
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| T |
7423029 |
tggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgata |
7422930 |
T |
|
| Q |
101 |
caatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcacca |
200 |
Q |
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| T |
7422929 |
caatcaagtttggctaatttgttgcatggatttaattggagattacctaatgatatgaagaaagaggatttgaatatggaggagatttttgggctgacta |
7422830 |
T |
|
| Q |
201 |
cacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaataagattgggaataatgg |
300 |
Q |
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| T |
7422829 |
ctcctaggaaaataccactagaagttgttgtggagcctagacttcctcatcatctttactccctctaagaatttttctttaataagattgggaataatgg |
7422730 |
T |
|
| Q |
301 |
gatttgtg |
308 |
Q |
| |
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|||||||| |
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| T |
7422729 |
gatttgtg |
7422722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 7429418 - 7429131
Alignment:
| Q |
18 |
taaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaa |
117 |
Q |
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| T |
7429418 |
taaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggctaa |
7429319 |
T |
|
| Q |
118 |
tttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcaccacacctaggaaaatacca |
217 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
7429318 |
cttgttgcatggatttaattggagattacctaatgatatgaaaaaagaggatttaaatatggaggagatttttgggctcactacacctaagaaaatacca |
7429219 |
T |
|
| Q |
218 |
ctagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaataagattgggaataatgggattt |
305 |
Q |
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||||||||||| | ||||||| |||||| |||||||||| | |||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
7429218 |
ttagaagttgttttggagcctaaacttccgtatcatctttattgcctctaagtatttttctctaataatattgggaataatgggattt |
7429131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 7415362 - 7415107
Alignment:
| Q |
9 |
atatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaag |
108 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |
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| T |
7415362 |
atatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttggtattaaggtgattcaaacaag |
7415263 |
T |
|
| Q |
109 |
tttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcaccacacctagg |
208 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
7415262 |
tttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttttgggctttctacacctaag |
7415163 |
T |
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| Q |
209 |
aaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccct |
264 |
Q |
| |
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||||||||| ||||| ||||| | |||||||||||| || |||||||||||||||| |
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| T |
7415162 |
aaaataccattagaaattgttgtggagcctagacttgctgatcatctttactccct |
7415107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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