View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_35 (Length: 306)
Name: NF4115_low_35
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 122 - 294
Target Start/End: Original strand, 15682967 - 15683143
Alignment:
| Q |
122 |
ataagcaaatgctagtggattagttacttctcagatttccacttctctagtgtctctcatcttttatccaattattatcaccgtataactaata----ta |
217 |
Q |
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| T |
15682967 |
ataagcaaatgctagtggattagttacttatcaaatttccatttctctagtatctctcatcttttatctaattattatcaccgtaaaactaatattttta |
15683066 |
T |
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| Q |
218 |
tttatttttgtatttgtcattcaaatatgtgtgtgtggtgcattgggtaagaccaatacattgattattaaagagta |
294 |
Q |
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| T |
15683067 |
tttttttttgtatttgtcattcaaatatgtgtgtgtggtgcattgggtgagaccaatacattgattattaaagagta |
15683143 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15682846 - 15682903
Alignment:
| Q |
1 |
agacatgaaaaaagatacagtgtgggatcaatcaatataagcttttatcaattaatgc |
58 |
Q |
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| T |
15682846 |
agacatgaaaaaagatacagtgtgggatcaatcaatataagcttttatcaattaatgc |
15682903 |
T |
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