View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_39 (Length: 263)
Name: NF4115_low_39
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 17605777 - 17605591
Alignment:
| Q |
24 |
actaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatca |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17605777 |
actaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaattca |
17605678 |
T |
|
| Q |
124 |
tgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17605677 |
tgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt |
17605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 16480318 - 16480504
Alignment:
| Q |
24 |
actaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatca |
123 |
Q |
| |
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||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| |||||||||| |||| ||| |
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| T |
16480318 |
actaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggataggaaattca |
16480417 |
T |
|
| Q |
124 |
tgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt |
210 |
Q |
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|||| | |||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16480418 |
tgttgtttttcggtgaaggcaacataaattcaaaatttggtgatggggggtcatttgtttgtgaggaagaaaaaccaatcacaggtt |
16480504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 17632366 - 17632184
Alignment:
| Q |
24 |
actaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatca |
123 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | | || |||||||||| |||||||||| |||| ||| |
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| T |
17632366 |
actaaatgtgaatataaagggtattcaggtgatggaggcgaagaaaaaaggcttggtgatagtagatgcctataaggtgactggggggataggaaattca |
17632267 |
T |
|
| Q |
124 |
tgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaagaaaaaccaatcaca |
206 |
Q |
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||||| | | ||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17632266 |
tgttattttctggtgaaggcaatataaattcaaaagttggtgatagggggtcatttgtttgtgaggaagaaaaatcaatcaca |
17632184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 17645904 - 17645761
Alignment:
| Q |
26 |
taaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatg |
125 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| ||||||||| |||||||| | ||||| |
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| T |
17645904 |
taaatgtgaatagaaagggtattcaggtgatgaaggtgatgaaaaaaggcttggtgacagtaaaggtctatgaggtgattgaggggatatatgattcatg |
17645805 |
T |
|
| Q |
126 |
ttactcttcggtgatggcaacataaatttagaagttggtgatag |
169 |
Q |
| |
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||||| || ||||| | ||||||||||| ||||||| ||||||| |
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| T |
17645804 |
ttactttttggtgaagtcaacataaattcagaagtttgtgatag |
17645761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 16475460 - 16475589
Alignment:
| Q |
24 |
actaaatgtgaatataaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatca |
123 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||| |||||||||| |||||||||| |||| ||| |
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| T |
16475460 |
actaaatgtgataataaagggtattcaggcgatgatggtgaagaaaataggcttggtgatagtagaggcctataaggtgactggggggataggaaattca |
16475559 |
T |
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| Q |
124 |
tgttactcttcggtgatggcaacataaatt |
153 |
Q |
| |
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|||| | |||||||| ||||||||||||| |
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| T |
16475560 |
tgttgtttttcggtgaaggcaacataaatt |
16475589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 16480568 - 16480603
Alignment:
| Q |
175 |
catttgtttgtgaggaagaaaaaccaatcacaggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
16480568 |
catttgtttgtgaggaagaaaaaccaatcacaggtt |
16480603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 17949741 - 17949894
Alignment:
| Q |
39 |
aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg |
138 |
Q |
| |
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|||||||||| |||||||||| | |||| ||||||||||||||||| ||| |||||||||| || ||| ||| ||| |||||||||| | ||| |
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| T |
17949741 |
aaagggtatttaggtgatgaaagcaaagagaaaaggcttggtgatagttgagggctataaggtgactgagggaatagaaaattcatgttactttctagtg |
17949840 |
T |
|
| Q |
139 |
atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag |
192 |
Q |
| |
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| ||||||| ||| | |||||| |||| | ||| |||||||||||||||||| |
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| T |
17949841 |
aaggcaacaaaaactctgaagttaatgattgagggccatttgtttgtgaggaag |
17949894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 17953593 - 17953746
Alignment:
| Q |
39 |
aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg |
138 |
Q |
| |
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|||||||||| |||||||||| | |||| ||||||||||||||||| ||| |||||||||| || ||| ||| ||| |||||||||| | ||| |
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| T |
17953593 |
aaagggtatttaggtgatgaaagcaaagagaaaaggcttggtgatagttgagggctataaggtgactgagggaatagaaaattcatgttactttctagtg |
17953692 |
T |
|
| Q |
139 |
atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag |
192 |
Q |
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| ||||||| ||| | |||||| |||| | ||| |||||||||||||||||| |
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| T |
17953693 |
aaggcaacaaaaactctgaagttaatgattgagggccatttgtttgtgaggaag |
17953746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 17650252 - 17650182
Alignment:
| Q |
121 |
tcatgttactcttcggtgatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaa |
191 |
Q |
| |
|
|||||||||| |||||||| | ||| | ||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
17650252 |
tcatgttactattcggtgaagacaataaaaattcagaagttggtgatctagggccatttgtttgtgaggaa |
17650182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 20751105 - 20751258
Alignment:
| Q |
39 |
aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaat-catgttactcttcggt |
137 |
Q |
| |
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||||||||||||||||||||| | |||| |||||||| |||||||| ||| |||||||||| || ||||||| |||||| ||||||||| | || |
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| T |
20751105 |
aaagggtattcaggtgatgaaagcaaagagaaaaggctcggtgatagttgagggctataaggtgactgaggggata-gaaaatccatgttactttctagt |
20751203 |
T |
|
| Q |
138 |
gatggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag |
192 |
Q |
| |
|
|| || |||| ||||| ||||||| |||| | || |||||||||| ||||||| |
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|
| T |
20751204 |
gaaggtaacaaaaattcagaagttattgatcgaaggccatttgtttgcgaggaag |
20751258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 18766979 - 18766826
Alignment:
| Q |
39 |
aaagggtattcaggtgatgaaggtgaagaaaaaaggcttggtgatagcaaaggcttataaggtgattggggggatatgaaaatcatgttactcttcggtg |
138 |
Q |
| |
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||||| |||| |||||||||| | ||| ||||| ||||||||||| ||| |||||||||| || |||||||| ||| |||||||||| | || |
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| T |
18766979 |
aaaggatatttaggtgatgaaagcatagagaaaagacttggtgatagttgagggctataaggtgactgaggggatataaaattcatgttactttctaatg |
18766880 |
T |
|
| Q |
139 |
atggcaacataaatttagaagttggtgatagggggtcatttgtttgtgaggaag |
192 |
Q |
| |
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||||||||| ||| | ||||||| |||| | ||| ||||| |||||||||||| |
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|
| T |
18766879 |
atggcaacaaaaactcagaagttaatgatcgagggccatttttttgtgaggaag |
18766826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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