View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_44 (Length: 240)

Name: NF4115_low_44
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_44
NF4115_low_44
[»] chr7 (4 HSPs)
chr7 (18-240)||(10575226-10575448)
chr7 (18-167)||(354316-354466)
chr7 (18-165)||(10580701-10580848)
chr7 (90-204)||(39955038-39955152)
[»] chr8 (1 HSPs)
chr8 (18-202)||(14261153-14261337)
[»] chr3 (7 HSPs)
chr3 (30-221)||(21584730-21584921)
chr3 (18-221)||(24497380-24497583)
chr3 (18-223)||(24920007-24920212)
chr3 (18-221)||(25084896-25085099)
chr3 (18-202)||(24923581-24923765)
chr3 (18-202)||(24981923-24982107)
chr3 (18-202)||(31825678-31825862)
[»] chr4 (3 HSPs)
chr4 (18-199)||(22898433-22898614)
chr4 (18-199)||(22950101-22950282)
chr4 (36-169)||(53328624-53328757)
[»] chr2 (1 HSPs)
chr2 (18-199)||(41027452-41027633)
[»] chr5 (1 HSPs)
chr5 (90-187)||(26358741-26358838)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 10575448 - 10575226
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10575448 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattcctt 10575349  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttga 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10575348 ggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttga 10575249  T
Q  218 gaaattgaagaatttgggaaatt 240  Q
    |||||||||||||||||||||||    
T  10575248 gaaattgaagaatttgggaaatt 10575226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 354466 - 354316
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaat-ccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcct 116  Q
    ||||||||||| |||||| ||||||||||||| ||  |||||||| || |||||||| |||||||| ||||||| |||||||||||||||||| ||||||    
T  354466 atcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcct 354367  T
Q  117 tggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcct 167  Q
    || |||||  | |  |||||||||| ||||| |||||||||||||||||||    
T  354366 tgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttcct 354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 10580848 - 10580701
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    ||||||||||  |||||| |||||||||||||||| |||||||| || ||||||||  ||||||| ||||||| |||||||||||||||||| |||||||    
T  10580848 atcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattcctt 10580749  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttc 165  Q
    | |||||  | |  |||||||||| || || |||||||||||||||||    
T  10580748 gaatgttaccgcaaagaaccttgcaatatcactttgcacctccctttc 10580701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 204
Target Start/End: Original strand, 39955038 - 39955152
Alignment:
Q  90 cgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccac 189  Q
    ||||||||||| ||||| || || |||||||||||||| || |||||||| |  || |||||||| ||||||||||| ||||| || ||||| |||||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 39955137  T
Q  190 gaccagacatttttg 204  Q
    |||| ||||||||||    
T  39955138 gacctgacatttttg 39955152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 14261153 - 14261337
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||||||||| |  ||||| ||||| ||||| || |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  14261153 atcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattcctt 14261252  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttt 202  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14261253 ggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacatttt 14261337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 21584730 - 21584921
Alignment:
Q  30 cctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattccttggatgttgtcac 129  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  21584730 cctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcac 21584829  T
Q  130 ggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttgagaaa 221  Q
    | ||||| || |  ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||  |  ||||||||||||||    
T  21584830 gaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaaa 21584921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 24497380 - 24497583
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| || ||||| ||||| || |    
T  24497380 atcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccct 24497479  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttga 217  Q
    ||||||||||||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||||||||| || ||||||||  |  ||||||||||    
T  24497480 ggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttga 24497579  T
Q  218 gaaa 221  Q
    ||||    
T  24497580 gaaa 24497583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 24920007 - 24920212
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| || ||||| ||||| || |    
T  24920007 atcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccct 24920106  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttga 217  Q
    ||||||| ||||| ||||| || | ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |   ||||||||||    
T  24920107 ggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttga 24920206  T
Q  218 gaaatt 223  Q
    ||||||    
T  24920207 gaaatt 24920212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 25085099 - 25084896
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||| |||||| || ||||| ||||| || |    
T  25085099 atcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccct 25085000  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttga 217  Q
    ||||||| ||||| |||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |   ||||||||||    
T  25084999 ggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttga 25084900  T
Q  218 gaaa 221  Q
    ||||    
T  25084899 gaaa 25084896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 24923581 - 24923765
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||| || ||||| ||||| || |    
T  24923581 atcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccct 24923680  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttt 202  Q
    ||||||| ||||| |||||||| | ||| |||||||||||||||||||| | ||| ||||||||||| |||||||| ||||||||    
T  24923681 ggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacatttt 24923765  T

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Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 24982107 - 24981923
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||| || ||||| ||||| || |    
T  24982107 atcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccct 24982008  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttt 202  Q
    ||||||| ||||| ||||| || | ||| |||||||||||||||||||||| ||| |||||||| |||||||| || ||||||||    
T  24982007 ggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacatttt 24981923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 31825678 - 31825862
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    |||||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||| |||||||||||||| || ||||| ||||| || |    
T  31825678 atcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccct 31825777  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacatttt 202  Q
    |||||||||| |||||||| || |  || || |||||||||||||||||||  || ||||||||||| |||||||| ||||||||    
T  31825778 ggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacatttt 31825862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 22898614 - 22898433
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    ||||||||||| || | ||| |||||||| ||||| |||||||| |  ||||| |||||||| | ||| |  |||||||||||||||||||| ||||| |    
T  22898614 atcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccct 22898515  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacat 199  Q
    ||||||||||||| || ||||| ||||||| |||||| || |||||||| || || || || || |||||||| ||||||||    
T  22898514 ggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22898433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 22950282 - 22950101
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    ||||||||||| || | ||| |||||||| ||||| |||||||| |  ||||| |||||||| | ||| |  |||||||||||||||||||| ||||| |    
T  22950282 atcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccct 22950183  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacat 199  Q
    ||||||||||||| || ||||| ||||||| |||||| || |||||||| || || || || || |||||||| ||||||||    
T  22950182 ggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22950101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 53328757 - 53328624
Alignment:
Q  36 gtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaa 135  Q
    ||||| |||||||| || |||||||| |  |||||||| || | ||| || |  ||||||||||| |||||||||||||| |||||||| || || ||||    
T  53328757 gtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaa 53328658  T
Q  136 ccttgcgatgtctctttgcacctccctttcctaa 169  Q
    |||| || ||||  || || || |||||||||||    
T  53328657 ccttacggtgtcgtttcgctccaccctttcctaa 53328624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 41027633 - 41027452
Alignment:
Q  18 atcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctagccaatcgacgaatcgctggctttgtgattcctt 117  Q
    ||||||||||| || | ||| || || |||||||| || || || |  ||||| |||||||| |  ||||| ||||||||||| ||||| || |||||||    
T  41027633 atcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaattcctt 41027534  T
Q  118 ggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttccacgaccagacat 199  Q
    | ||||| ||||| || ||||| || ||||  ||||| ||||||||||| ||||| || || || |||||||| ||||||||    
T  41027533 gaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 41027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 26358741 - 26358838
Alignment:
Q  90 cgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacctccctttcctaatcctttacctccctttcc 187  Q
    ||||||||||| || || || ||||| || ||||| || || ||||| |||||||| | ||||||||| ||||||||||| || || ||||| |||||    
T  26358741 cgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcc 26358838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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