View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_45 (Length: 240)
Name: NF4115_low_45
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30361024 - 30360797
Alignment:
| Q |
1 |
atttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttccaaagaaattttaacaaccaggacnnnnnnnn |
100 |
Q |
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| T |
30361024 |
atttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttcaaaagaaatttaaacaaccaggactttttttt |
30360925 |
T |
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| Q |
101 |
cttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaatcccagttccagag |
200 |
Q |
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| T |
30360924 |
catttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaatcccagttccagag |
30360825 |
T |
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| Q |
201 |
aaggtccgtaaaccccttacacaggttc |
228 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
30360824 |
aaggtccgcaaaccccttacacaggttc |
30360797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 19916321 - 19916201
Alignment:
| Q |
103 |
tttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaatcccagttccagagaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19916321 |
tttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgcagggacccaatcccagttccagagaa |
19916222 |
T |
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| Q |
203 |
ggtccgtaaaccccttacaca |
223 |
Q |
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|||||| |||||||||||||| |
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| T |
19916221 |
ggtccgcaaaccccttacaca |
19916201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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