View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_46 (Length: 237)
Name: NF4115_low_46
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7423130 - 7423364
Alignment:
| Q |
1 |
cataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacata |
100 |
Q |
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| T |
7423130 |
cataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacata |
7423229 |
T |
|
| Q |
101 |
aggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423230 |
aggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcaca |
7423329 |
T |
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| Q |
201 |
agctcggagattgcccattcaactgtaactgtaga |
235 |
Q |
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|||||||||||||||||||| ||||| |||||||| |
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| T |
7423330 |
agctcggagattgcccattctactgttactgtaga |
7423364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7429539 - 7429758
Alignment:
| Q |
1 |
cataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacata |
100 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7429539 |
cataaccatcaacattgcaattctcagtagcttctcttggcactaacattggtgtcacaggatgaagcctcattgtttctttagcaattgcaaaaacata |
7429638 |
T |
|
| Q |
101 |
aggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
7429639 |
aggtaaattgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcaca |
7429738 |
T |
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| Q |
201 |
agctcggagattgcccattc |
220 |
Q |
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||||| || ||||||||||| |
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| T |
7429739 |
agctcagaaattgcccattc |
7429758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 7415473 - 7415701
Alignment:
| Q |
3 |
taaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcctcattgtttctttagcaattgcaaaaacataag |
102 |
Q |
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||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| | ||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
7415473 |
taaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccacgggatgtagcctcattgtttctttagcaattgcgtaaacataag |
7415572 |
T |
|
| Q |
103 |
gtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaag |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| || ||| |||||| |||||||| ||| | || || |
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| T |
7415573 |
gtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccag |
7415672 |
T |
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| Q |
203 |
ctcggagattgcccattcaactgtaactg |
231 |
Q |
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|||||||||||||||||| ||||| |||| |
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| T |
7415673 |
ctcggagattgcccattctactgttactg |
7415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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