View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_53 (Length: 227)

Name: NF4115_low_53
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_53
NF4115_low_53
[»] chr7 (3 HSPs)
chr7 (88-227)||(26012932-26013071)
chr7 (106-227)||(25038003-25038124)
chr7 (107-222)||(1939315-1939430)
[»] chr3 (2 HSPs)
chr3 (88-227)||(44995411-44995549)
chr3 (135-216)||(35423392-35423473)
[»] chr8 (6 HSPs)
chr8 (88-227)||(24431599-24431738)
chr8 (106-227)||(7991036-7991157)
chr8 (111-227)||(21352687-21352803)
chr8 (106-227)||(39810426-39810547)
chr8 (106-216)||(8607675-8607784)
chr8 (106-200)||(38584297-38584391)
[»] chr4 (5 HSPs)
chr4 (104-227)||(42383582-42383705)
chr4 (106-227)||(34564639-34564760)
chr4 (104-216)||(2112888-2113000)
chr4 (110-227)||(51392765-51392882)
chr4 (124-216)||(33527288-33527377)
[»] chr2 (1 HSPs)
chr2 (106-227)||(38902298-38902419)
[»] chr1 (2 HSPs)
chr1 (134-227)||(40500992-40501085)
chr1 (106-227)||(44334858-44334985)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 26013071 - 26012932
Alignment:
Q  88 cacttaacaatttatttttggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttca 187  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| |    
T  26013071 cacttaacaatttatttttggagaaagaccagtcgcgcctgtcaggcgtgtgtagtgcactctccctacaaaccagttgttttgcgccacatcatcttta 26012972  T
Q  188 gcttggcccaccattctcctattcaacatgttgaatgcat 227  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  26012971 gcttgacccaccattctcccattcaacatgttgaatgcat 26012932  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 25038124 - 25038003
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| |||||||||    
T  25038124 tggagaaagaccagtcgcgcctgtcaggcgtgtgtagtgcactctccctacaaaccacttgttttgcgccacatcatcttcagcttggccaaccattctc 25038025  T
Q  206 ctattcaacatgttgaatgcat 227  Q
    | ||||||||||||||||||||    
T  25038024 ccattcaacatgttgaatgcat 25038003  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 1939430 - 1939315
Alignment:
Q  107 ggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcc 206  Q
    ||||||||||| | |||  ||||| ||||  ||||||||||||||||| |||| || || ||||||||||  ||||||||||||||||||||| || |||    
T  1939430 ggagaaagaccggtcgcatctgtctggcgcatgtagtgcactctccctacaaaccacttcttttgcgccatatcatcttcagcttggcccaccgttgtcc 1939331  T
Q  207 tattcaacatgttgaa 222  Q
      ||||||||||||||    
T  1939330 ctttcaacatgttgaa 1939315  T

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Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 44995411 - 44995549
Alignment:
Q  88 cacttaacaatttatttttggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttca 187  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||    
T  44995411 cacttaacaatttatttttggagaaagaccagc-gcacctgtcaggcgtgtgtagtgcactctccctacaaaccacttgttttgcgccacatcatcttca 44995509  T
Q  188 gcttggcccaccattctcctattcaacatgttgaatgcat 227  Q
     |||||||||||||||||||||||||||||||||||||||    
T  44995510 acttggcccaccattctcctattcaacatgttgaatgcat 44995549  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 35423473 - 35423392
Alignment:
Q  135 gtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcctattcaacat 216  Q
    |||||||||||||||||| | |||| || |||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  35423473 gtgtgtagtgcactctccttacaaaccacttgttttgcgccacatcatctttagcttggcccaccattctcccattcaacat 35423392  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 24431738 - 24431599
Alignment:
Q  88 cacttaacaatttatttttggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttca 187  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| || |||||||||| ||| || ||||||    
T  24431738 cacttaacaatttatttttggagaaagaccagtcgcacctgtcaggcgtgtgtagtgcactctccctacaaaccacttgttttgcgtcacatcttcttca 24431639  T
Q  188 gcttggcccaccattctcctattcaacatgttgaatgcat 227  Q
    ||||| ||||||||||||  ||||||||||||||||||||    
T  24431638 gcttgacccaccattctctcattcaacatgttgaatgcat 24431599  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 7991036 - 7991157
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||||||| |||| || ||||| |||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||    
T  7991036 tggagaaagaccagtcgcgtctatcaggtgtgtgtagtgcactctccctccaaaccacttgttttgcgccacatcatcttcagcttggcccaccattctc 7991135  T
Q  206 ctattcaacatgttgaatgcat 227  Q
      ||||||||| ||||||||||    
T  7991136 tcattcaacatattgaatgcat 7991157  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 21352687 - 21352803
Alignment:
Q  111 aaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcctatt 210  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||| |||| || ||||||||||| || ||||||||||||||| |||||||||||| |||    
T  21352687 aaagatcagtcgcgcctgtcagacgtgtgtagtgcactctccctacaaaccacttgttttgcgcaacatcatcttcagcttggtccaccattctcccatt 21352786  T
Q  211 caacatgttgaatgcat 227  Q
    |||||| ||||||||||    
T  21352787 caacatattgaatgcat 21352803  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 39810547 - 39810426
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||||||  ||||| ||||||||||||||||||||| || ||| |||| || |||||||||||||| |||||||||||||| |||||||||||     
T  39810547 tggagaaagaccaatcgcgcttgtcaggcgtgtgtagtgcacccttcctacaaaccacttgttttgcgccacatcatcttcagcttgtcccaccattctt 39810448  T
Q  206 ctattcaacatgttgaatgcat 227  Q
    | |||||||| |||||||||||    
T  39810447 ccattcaacaagttgaatgcat 39810426  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 8607784 - 8607675
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||| || ||||||||||| || |||||||||| ||||||||||||||||    
T  8607784 tggagaaagaccagtcg-gcctgtcaggcgcatgtagtgcactctccctacaaaccacttgttttgcgctacatcatcttcagattggcccaccattctc 8607686  T
Q  206 ctattcaacat 216  Q
    | |||||||||    
T  8607685 ccattcaacat 8607675  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 38584391 - 38584297
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccacca 200  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||| |||| || |||||||||||||| ||||||||| ||||||||||||    
T  38584391 tggagaaagaccagtcacgcctgtcaggcgtgtgtagtgcactcttcctacaaaccacttgttttgcgccacatcatcttcaacttggcccacca 38584297  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 42383705 - 42383582
Alignment:
Q  104 tttggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattc 203  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||    
T  42383705 tttggagaaagaccagtcgcgtctgtcaggcatgtgtagtgcactctccctacaaaccacttgttttgcgccacatcatcttcagcttggcccaccattc 42383606  T
Q  204 tcctattcaacatgttgaatgcat 227  Q
    ||| ||||||||||||||||||||    
T  42383605 tcccattcaacatgttgaatgcat 42383582  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 34564639 - 34564760
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||| |||| || |||||||||||||| ||||||||||||||||||||||||| |    
T  34564639 tggagaaagaccagtcgcgcctgtcaggcgtgtgtagtgcaccctccctacaaaccacttgttttgcgccacatcatcttcagcttggcccaccattcac 34564738  T
Q  206 ctattcaacatgttgaatgcat 227  Q
    | ||||||||||||||||||||    
T  34564739 ccattcaacatgttgaatgcat 34564760  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 2112888 - 2113000
Alignment:
Q  104 tttggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattc 203  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||   ||| || ||||||||| |||| |||||||||||||||||||||||||    
T  2112888 tttggagaaagacgagacgcgcctgtcaggcgtgtgtagtgcactctcccgataaaccacttgttttgcaccacatcatcttcagcttggcccaccattc 2112987  T
Q  204 tcctattcaacat 216  Q
    ||| |||||||||    
T  2112988 tcccattcaacat 2113000  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 51392765 - 51392882
Alignment:
Q  110 gaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcctat 209  Q
    |||||||||| ||||||||||||||||||||||||||| || ||| |||| || |||||||||||||| ||||||||| |||| || |||||||||  ||    
T  51392765 gaaagaccagtcgcgcctgtcaggcgtgtgtagtgcacactgcctacaaaccacttgttttgcgccacatcatcttcaacttgcccaaccattctctcat 51392864  T
Q  210 tcaacatgttgaatgcat 227  Q
    ||||||||||||||||||    
T  51392865 tcaacatgttgaatgcat 51392882  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 33527288 - 33527377
Alignment:
Q  124 gcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcctattcaacat 216  Q
    ||||||||||  ||||||||||||||||||| |||| || ||||||||| |||   ||||||||| ||||||||||||||||| |||||||||    
T  33527288 gcctgtcaggtttgtgtagtgcactctccctacaaaccacttgttttgctcca---catcttcagtttggcccaccattctcccattcaacat 33527377  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 38902298 - 38902419
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctc 205  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| ||| |||| || |||||||||||||| ||||||||| |||||||||||||||||    
T  38902298 tggagaaagatcagtcgcgcctgtcaggcgtgtgtagtgcactcttcctacaaaccacttgttttgcgccacatcatcttcaacttggcccaccattctc 38902397  T
Q  206 ctattcaacatgttgaatgcat 227  Q
      |||||| |||||||||||||    
T  38902398 tcattcaatatgttgaatgcat 38902419  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 40500992 - 40501085
Alignment:
Q  134 cgtgtgtagtgcactctcccttcaaatcatttgttttgcgccacttcatcttcagcttggcccaccattctcctattcaacatgttgaatgcat 227  Q
    ||||||||||||||||||||| |||| || |||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  40500992 cgtgtgtagtgcactctccctacaaaccacttgttttgcgccacatcatcttcagtttggcccaccattctcccattcaacatgttgaatgcat 40501085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 44334858 - 44334985
Alignment:
Q  106 tggagaaagaccagccgcgcctgtcaggcgtgtgtagtgcactctcc------cttcaaatcatttgttttgcgccacttcatcttcagcttggcccacc 199  Q
    |||||||||||||  ||| ||||||||||||||||| ||||||||||      || |||| || |||||||||||||| |||||||||| ||||||||||    
T  44334858 tggagaaagaccaatcgcacctgtcaggcgtgtgtaatgcactctccgtctccctacaaaccacttgttttgcgccacatcatcttcagtttggcccacc 44334957  T
Q  200 attctcctattcaacatgttgaatgcat 227  Q
    ||||||| ||||||||||||||||||||    
T  44334958 attctcccattcaacatgttgaatgcat 44334985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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