View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_55 (Length: 224)
Name: NF4115_low_55
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 11829601 - 11829475
Alignment:
| Q |
1 |
tctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
11829601 |
tctgcattcagaaagaaccagtctttcaagtgaagtgaggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttc |
11829502 |
T |
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| Q |
101 |
aaagttttcacgttttcagctccccat |
127 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
11829501 |
aaagttttcacgttttcaactccccat |
11829475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 11861700 - 11861574
Alignment:
| Q |
1 |
tctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
11861700 |
tctgcattcagaaagaaccagtttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttc |
11861601 |
T |
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| Q |
101 |
aaagttttcacgttttcagctccccat |
127 |
Q |
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||||| ||||| |||||| |||||||| |
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| T |
11861600 |
aaagtgttcacattttcaactccccat |
11861574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 12040495 - 12040402
Alignment:
| Q |
1 |
tctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaag |
94 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||| | ||| ||||| || | |||||||||||| ||||||||||||| ||||||| |
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| T |
12040495 |
tctgcattccgaaagaaccagtttttcaagtgaagcgaagttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaag |
12040402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11733390 - 11733276
Alignment:
| Q |
1 |
tctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttc |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||| || || |||| ||||||||||| |||||||| | ||||||||||||||||||| |||||| |
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| T |
11733390 |
tctgcattcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaatcataaatccttaaatctttc |
11733291 |
T |
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| Q |
101 |
aaagttttcacgttt |
115 |
Q |
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|| | ||||| |||| |
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| T |
11733290 |
aatgatttcaagttt |
11733276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11900818 - 11900935
Alignment:
| Q |
1 |
tctgcattcagaaagaaccagtttttcaagtgaagttaggttacctatactttctggtaaagaagttaaaccatggcaatcataaatccttaagtctttc |
100 |
Q |
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|
|||||||||||||| ||| ||||| |||| ||||| ||||||||||| ||||||| || ||||| ||||||||||||||||| |||||| || | | |
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| T |
11900818 |
tctgcattcagaaataactagtttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgc |
11900917 |
T |
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| Q |
101 |
aaagttttcacgttttca |
118 |
Q |
| |
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|||| |||| ||||||| |
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| T |
11900918 |
aaagagttcaagttttca |
11900935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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