View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4115_low_56 (Length: 223)
Name: NF4115_low_56
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4115_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 11733313 - 11733501
Alignment:
| Q |
23 |
tgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaag |
122 |
Q |
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| T |
11733313 |
tgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaag |
11733412 |
T |
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| Q |
123 |
gaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgat |
211 |
Q |
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| T |
11733413 |
gaatgataaagctcacgtcactatttaccttgatcattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgat |
11733501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 11861630 - 11861811
Alignment:
| Q |
30 |
gtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgat |
129 |
Q |
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| T |
11861630 |
gtttaacttttttaccagaaagtataggtaacctcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatgga |
11861729 |
T |
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| Q |
130 |
aaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgat |
211 |
Q |
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| T |
11861730 |
aaagcttgagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggtgatgat |
11861811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 11829531 - 11829712
Alignment:
| Q |
30 |
gtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgat |
129 |
Q |
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| T |
11829531 |
gtttaacttctttaccagaaagtataggtaacctcacttcacttgaaagactggttctttctgaatgcagaaatttagattctcttcccaaaggaatgga |
11829630 |
T |
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| Q |
130 |
aaagctcacgtcactatttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgat |
211 |
Q |
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| T |
11829631 |
aatgcttcagtctctaaatactttgattattatggattgccctttgttattgccaaggtgtcaaccagacacaggtgatgat |
11829712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 12040473 - 12040606
Alignment:
| Q |
78 |
aactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgaacattatggactgccccttgtt |
177 |
Q |
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| T |
12040473 |
aactggttctttcggaatgcagaaagttagattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtt |
12040572 |
T |
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| Q |
178 |
attgccaaggtgtcaacctgaaacgggtgatgat |
211 |
Q |
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| T |
12040573 |
attgccaaggtgtcaaccagacacgggtgatgat |
12040606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 11900873 - 11900707
Alignment:
| Q |
45 |
cagaaaccatagacaatctcacttcacttcgtgaactggttctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcact |
144 |
Q |
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|||||| ||||| || |||||||| ||| | |||| ||| ||||||||||||||| | | |||| ||||||||| || ||| || ||| ||| || |
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| T |
11900873 |
cagaaagcataggtaacctcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctct |
11900774 |
T |
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| Q |
145 |
atttaccttgaacattatggactgccccttgttattgccaaggtgtcaacctgaaacgggtgatgat |
211 |
Q |
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| T |
11900773 |
aaatactttgattattatggattgccctttgttattgccaaggtgtcaacccgacacaggtgatgat |
11900707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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