View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_8 (Length: 552)

Name: NF4115_low_8
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_8
NF4115_low_8
[»] chr1 (32 HSPs)
chr1 (233-545)||(6299256-6299568)
chr1 (1-161)||(6299729-6299892)
chr1 (236-348)||(38868992-38869104)
chr1 (169-234)||(6299630-6299698)
chr1 (236-323)||(42501218-42501305)
chr1 (236-346)||(17815589-17815699)
chr1 (236-323)||(6025715-6025802)
chr1 (264-332)||(12231503-12231571)
chr1 (269-349)||(15577561-15577641)
chr1 (236-323)||(43423829-43423916)
chr1 (266-316)||(8203226-8203276)
chr1 (266-316)||(19969304-19969354)
chr1 (236-322)||(44008689-44008775)
chr1 (266-323)||(8342966-8343023)
chr1 (266-323)||(21251753-21251810)
chr1 (266-323)||(30834062-30834119)
chr1 (268-316)||(3818948-3818996)
chr1 (276-348)||(30396789-30396861)
chr1 (266-322)||(46388516-46388572)
chr1 (266-322)||(46394960-46395016)
chr1 (264-316)||(52561681-52561733)
chr1 (236-339)||(853854-853957)
chr1 (266-316)||(40416511-40416561)
chr1 (236-338)||(16822090-16822194)
chr1 (291-344)||(17267794-17267847)
chr1 (291-344)||(17275350-17275403)
chr1 (236-309)||(33560957-33561030)
chr1 (294-323)||(43954364-43954393)
chr1 (236-339)||(52160312-52160408)
chr1 (289-337)||(10584968-10585016)
chr1 (252-316)||(39515960-39516024)
chr1 (295-339)||(40920598-40920642)
[»] chr4 (39 HSPs)
chr4 (236-339)||(40018258-40018361)
chr4 (236-347)||(42293326-42293437)
chr4 (243-348)||(47147490-47147593)
chr4 (266-320)||(50662528-50662582)
chr4 (236-337)||(54470317-54470418)
chr4 (270-337)||(38903789-38903856)
chr4 (266-348)||(934491-934573)
chr4 (236-330)||(30853453-30853547)
chr4 (242-332)||(45569085-45569175)
chr4 (266-316)||(50680880-50680930)
chr4 (275-348)||(6843764-6843837)
chr4 (236-348)||(55028926-55029043)
chr4 (277-320)||(7544611-7544654)
chr4 (236-339)||(7681979-7682082)
chr4 (265-348)||(21214646-21214729)
chr4 (237-316)||(26356730-26356809)
chr4 (266-316)||(10209176-10209226)
chr4 (270-339)||(21879222-21879292)
chr4 (290-348)||(22420777-22420835)
chr4 (266-316)||(33225925-33225975)
chr4 (266-320)||(37488231-37488285)
chr4 (275-323)||(37042749-37042797)
chr4 (237-348)||(42639080-42639191)
chr4 (236-323)||(43069903-43069990)
chr4 (270-316)||(26024942-26024988)
chr4 (266-348)||(31403094-31403176)
chr4 (266-316)||(31961358-31961408)
chr4 (238-316)||(34233116-34233194)
chr4 (266-316)||(55809082-55809132)
chr4 (291-336)||(41192226-41192271)
chr4 (236-313)||(53517640-53517717)
chr4 (275-323)||(20047584-20047632)
chr4 (280-316)||(26025011-26025047)
chr4 (272-320)||(28550543-28550591)
chr4 (267-339)||(40654196-40654268)
chr4 (289-321)||(44047458-44047490)
chr4 (236-316)||(44667337-44667417)
chr4 (240-316)||(55771631-55771707)
chr4 (240-316)||(55835867-55835943)
[»] chr2 (21 HSPs)
chr2 (236-332)||(18188862-18188958)
chr2 (269-339)||(41779179-41779249)
chr2 (236-339)||(26784409-26784512)
chr2 (236-316)||(38860288-38860368)
chr2 (266-332)||(12026081-12026147)
chr2 (269-323)||(29548722-29548776)
chr2 (278-339)||(8197610-8197671)
chr2 (278-339)||(8202370-8202431)
chr2 (236-348)||(33504333-33504446)
chr2 (237-323)||(19235069-19235155)
chr2 (266-316)||(33287561-33287611)
chr2 (275-316)||(1626344-1626385)
chr2 (236-316)||(9556461-9556541)
chr2 (237-321)||(19024289-19024373)
chr2 (236-312)||(38435062-38435138)
chr2 (266-313)||(2807585-2807632)
chr2 (275-321)||(43832247-43832293)
chr2 (278-315)||(41022486-41022523)
chr2 (275-348)||(42149720-42149793)
chr2 (289-337)||(31254451-31254499)
chr2 (287-323)||(42582523-42582559)
[»] chr8 (24 HSPs)
chr8 (236-323)||(79137-79224)
chr8 (237-339)||(10079976-10080078)
chr8 (236-316)||(24399881-24399961)
chr8 (236-316)||(35643698-35643778)
chr8 (266-348)||(10108953-10109035)
chr8 (236-337)||(38178331-38178432)
chr8 (236-348)||(16715383-16715495)
chr8 (236-332)||(24739924-24740020)
chr8 (264-316)||(30198358-30198410)
chr8 (266-321)||(4011223-4011278)
chr8 (266-316)||(39967591-39967641)
chr8 (266-339)||(23023365-23023438)
chr8 (275-315)||(3645235-3645275)
chr8 (236-316)||(29520760-29520839)
chr8 (277-313)||(34196551-34196587)
chr8 (236-316)||(45512587-45512667)
chr8 (267-314)||(24558624-24558671)
chr8 (278-348)||(11733899-11733969)
chr8 (266-316)||(16351518-16351568)
chr8 (289-323)||(33666655-33666689)
chr8 (266-323)||(39388922-39388980)
chr8 (289-339)||(44175275-44175325)
chr8 (236-316)||(16971846-16971926)
chr8 (276-316)||(30783134-30783174)
[»] chr6 (10 HSPs)
chr6 (238-311)||(32400245-32400318)
chr6 (237-316)||(10617326-10617405)
chr6 (265-348)||(35199683-35199765)
chr6 (236-337)||(1747712-1747813)
chr6 (243-316)||(34597-34670)
chr6 (259-316)||(31831951-31832008)
chr6 (269-316)||(1681613-1681660)
chr6 (236-346)||(5053637-5053746)
chr6 (266-348)||(6293452-6293534)
chr6 (266-316)||(9593800-9593850)
[»] chr3 (21 HSPs)
chr3 (236-348)||(55244387-55244500)
chr3 (236-332)||(40982006-40982102)
chr3 (266-338)||(46431749-46431821)
chr3 (266-316)||(36820069-36820119)
chr3 (266-339)||(43308702-43308775)
chr3 (236-348)||(37598230-37598341)
chr3 (237-316)||(11581555-11581634)
chr3 (270-315)||(2340810-2340855)
chr3 (236-316)||(40116560-40116640)
chr3 (266-322)||(44443290-44443346)
chr3 (266-321)||(41452827-41452882)
chr3 (266-316)||(2198978-2199028)
chr3 (266-312)||(7278599-7278645)
chr3 (266-316)||(39600773-39600823)
chr3 (267-323)||(21427669-21427723)
chr3 (243-316)||(33755434-33755507)
chr3 (269-314)||(44133938-44133983)
chr3 (275-323)||(33700332-33700380)
chr3 (268-316)||(41087886-41087934)
chr3 (236-316)||(47804755-47804835)
chr3 (276-348)||(49841766-49841838)
[»] scaffold0325 (1 HSPs)
scaffold0325 (236-315)||(11907-11986)
[»] chr5 (21 HSPs)
chr5 (236-338)||(18698904-18699006)
chr5 (266-316)||(30588587-30588637)
chr5 (243-348)||(12576920-12577025)
chr5 (236-316)||(7359352-7359432)
chr5 (239-322)||(4026414-4026497)
chr5 (237-323)||(14749418-14749504)
chr5 (289-339)||(28005698-28005748)
chr5 (266-316)||(33667575-33667625)
chr5 (236-313)||(3775162-3775239)
chr5 (243-316)||(14667888-14667961)
chr5 (266-339)||(27998581-27998654)
chr5 (266-323)||(38684620-38684677)
chr5 (236-348)||(36123242-36123354)
chr5 (236-316)||(43475350-43475429)
chr5 (266-321)||(2066137-2066192)
chr5 (237-316)||(2713055-2713134)
chr5 (277-332)||(28186851-28186906)
chr5 (236-316)||(6889103-6889183)
chr5 (276-316)||(7678628-7678668)
chr5 (264-320)||(17340524-17340580)
chr5 (266-310)||(29922424-29922468)
[»] scaffold0015 (1 HSPs)
scaffold0015 (266-322)||(66677-66733)
[»] chr7 (24 HSPs)
chr7 (267-335)||(29653619-29653687)
chr7 (277-339)||(40139017-40139079)
chr7 (243-348)||(22174117-22174222)
chr7 (238-323)||(28858157-28858242)
chr7 (238-322)||(30144887-30144971)
chr7 (289-348)||(30200024-30200083)
chr7 (266-316)||(1569156-1569206)
chr7 (266-348)||(12966156-12966238)
chr7 (236-346)||(36193729-36193838)
chr7 (266-316)||(44401217-44401267)
chr7 (266-316)||(45601616-45601666)
chr7 (275-316)||(24549780-24549821)
chr7 (279-335)||(9191928-9191984)
chr7 (236-316)||(28628025-28628105)
chr7 (236-308)||(30814771-30814843)
chr7 (236-316)||(38135305-38135385)
chr7 (236-316)||(48202794-48202874)
chr7 (246-316)||(30664688-30664758)
chr7 (236-338)||(32368407-32368509)
chr7 (269-323)||(41461242-41461296)
chr7 (277-323)||(42103606-42103652)
chr7 (236-316)||(40830312-40830392)
chr7 (287-339)||(41578192-41578244)
chr7 (266-338)||(42177088-42177160)
[»] scaffold0373 (1 HSPs)
scaffold0373 (275-348)||(2361-2434)
[»] scaffold0018 (1 HSPs)
scaffold0018 (266-316)||(178512-178562)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 233 - 545
Target Start/End: Complemental strand, 6299568 - 6299256
Alignment:
Q  233 gtctagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6299568 gtctagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 6299469  T
Q  333 tatgatacagcattatttatttgaacaatgtagccactagccaactccacttagcgggataggctttgaattctgcagtcattgttaacnnnnnnnatat 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  6299468 tatgatacagcattatttatttgaacaatgtagccactagccaactccacttagcgggataggctttgaattctgcagtcattgttaactttttttatat 6299369  T
Q  433 gtagatttaaatttgataacggaaattcattttagttaaagaagttataacatgaaaataagggatcatcttttatattgctatttctgtagcacccaca 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6299368 gtagatttaaatttgataacggaaattcattttagttaaagaagttataacatgaaaataagggatcaacttttatattgctatttctgtagcacccaca 6299269  T
Q  533 tgtgatgatgtcc 545  Q
    |||| || |||||    
T  6299268 tgtgttggtgtcc 6299256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6299892 - 6299729
Alignment:
Q  1 tcatgaatctcatcacctttcactctctttgcctgtaagccataattcagatctctatttcctatgaattagttagtttatttatctttattgtattann 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6299892 tcatgaatctcatcacctttcactctctttgcctgtaagccataattcagatctctatttcctatgaattagttagtttatttatctttattgtattatt 6299793  T
Q  101 nnnnnaaaatattttcttctattggt---aaaccaatacaaggatgttgtgttgggtgtgtgtg 161  Q
          ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  6299792 ttttttaaatattttcttctattggtaagaaaccaatacaaggatgttgtgttgggtgtgtgtg 6299729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 38868992 - 38869104
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||| |||||||| |||||  | |||||||| ||||||||||||| ||||||||||||||| |||||||| ||| ||||||  |||| |||||    
T  38868992 tagtcaaatcattagaggcagaagaagacctagaaaaactataagagaaattattaagaaagatctagcgattaatgggttggatagatatatggtatat 38869091  T
Q  336 gatacagcattat 348  Q
    |||| | ||||||    
T  38869092 gatagaacattat 38869104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 6299698 - 6299630
Alignment:
Q  169 acaactttagatagttg---ggtgtaacagctatagtataaaagatattggaagctcggtttaggtggt 234  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6299698 acaactttagatagttgttgggtgtaacagctatagtataaaagatatttgaagctcggtttaggtggt 6299630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 42501218 - 42501305
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||| |||||| | | |||| | |||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  42501218 tagtcaaatcattagaggtagaggaaaacctagaaaaactataagagaaattattaagaaagatctatagattaatgagttggataga 42501305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 17815589 - 17815699
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||| | |||||||  |||  | |||||||||||||||||||| | || |||||||||||| |||| ||||||| ||||||  |||| |||||    
T  17815589 tagtcaaatcattggaggcaagggaagacctagaaaaattataagagaaactatttagaaagatctagtgattgatgagttagatagaaatatggtatat 17815688  T
Q  336 gatacagcatt 346  Q
    |||| ||||||    
T  17815689 gatagagcatt 17815699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 6025715 - 6025802
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||||||||||||||| | |||  | |||||||| ||||||||| | |  ||| ||||||||||||||||||||||| ||||||    
T  6025715 tagtcaaatcactagaggcagaggaagacctagaaaaactataagagatactagtaaaaaagatctagagattaatgagttggataga 6025802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 12231503 - 12231571
Alignment:
Q  264 cttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    |||||||||| ||||||||| | | ||||||||||||| |||||||||||||| ||||||  |||||||    
T  12231503 cttagaaaaactataagagagactattaagaaagatctcgagattaatgagttggatagagatatgata 12231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 15577561 - 15577641
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattatt 349  Q
    |||||| |||||||||| | ||||||| ||| |||||||||||||||| ||||||  |||||||| ||||| | |||||||    
T  15577561 aaaaataataagagaaactattaagaaggatatagagattaatgagttggatagagatatgatatttgatagaacattatt 15577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 43423829 - 43423916
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||||||||||||| | | |||  | ||||||||||| |||||| |   ||||||||||||||||||||| |||||| ||||||    
T  43423829 tagtcaaatcactagaggtagaggaagacctagaaaaattacaagagagaccattaagaaagatctagagattagtgagttggataga 43423916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 8203276 - 8203226
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  8203276 tagaaaaactataagagaaactattaaaaaagatctagagattaatgagtt 8203226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 19969354 - 19969304
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  19969354 tagaaaaactataagagaaactattaacaaagatctagagattaatgagtt 19969304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 44008689 - 44008775
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||||||||||||||||||| | |||  | |||||||| | ||||||||| | |  |||||||||||||||| |||||||| |||||    
T  44008689 tagtcaaatcactagaggcagaggaagacctagaaaaaatctaagagaaactatcgagaaagatctagagatcaatgagttggatag 44008775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 8343023 - 8342966
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||| |||||||||||   |||| ||||||||||||||||||||||| ||||||    
T  8343023 tagaaaaactataagagaaacaattaataaagatctagagattaatgagttggataga 8342966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 21251753 - 21251810
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||||||||||||   | |||||| |||||||||| |||||||||||||||    
T  21251753 tagaaaaattataagagaaaccataaagaaatatctagagatcaatgagtttgataga 21251810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 30834119 - 30834062
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||  ||||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  30834119 tagaaaagctataagagaaactattacgaaagatctagagattaatgagttggataga 30834062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 3818996 - 3818948
Alignment:
Q  268 gaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||||||||| | ||||||||||| ||||||||||||||||    
T  3818996 gaaaaactataagagaaactattaagaaagatttagagattaatgagtt 3818948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 30396861 - 30396789
Alignment:
Q  276 ataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||||| ||||||||| |||| ||||||||||||||| |||||   || ||||||||||| | ||||||    
T  30396861 ataagagaaactgttaagaaggatccagagattaatgagttggatagggatacgatatatgatagaacattat 30396789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 46388516 - 46388572
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||||||| ||||||||||| | ||||||| |||||||||||| ||||||| |||||    
T  46388516 tagaaaaactataagagaaacttttaagaatgatctagagattgatgagttggatag 46388572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 46394960 - 46395016
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||||||| ||||||||||| | ||||||| |||||||||||| ||||||| |||||    
T  46394960 tagaaaaactataagagaaacttttaagaatgatctagagattgatgagttggatag 46395016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 52561733 - 52561681
Alignment:
Q  264 cttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||    
T  52561733 cttagaaaaactataagagaaactgttaggaaagatttagaggttaatgagtt 52561681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 853957 - 853854
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||||||||||||| | |||  | || ||||  |||| |||||| | ||||||| ||||||||||||| |||||| |||||    |||||||||    
T  853957 tagtcaaatcactagaggcagaggaagacctaaaaaatctatacgagaaactattaagaaggatctagagattagtgagttggatagggacatgatatat 853858  T
Q  336 gata 339  Q
    ||||    
T  853857 gata 853854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 40416511 - 40416561
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||| ||| | |||||||||||||| |||||||||||||    
T  40416511 tagaaaaactataagacaaactattaagaaagatctatagattaatgagtt 40416561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 16822194 - 16822090
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaat--tataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatat 333  Q
    ||||||||| |||||||||||| |||| | || |||||   || |||||||| |  |||||||||| |||||||||||||| | |||||   ||||||||    
T  16822194 tagtcaaattactagaggcaaaggaaaacgtaaaaaaaaactacaagagaaactagtaagaaagatgtagagattaatgagctggatagcgatatgatat 16822095  T
Q  334 atgat 338  Q
    |||||    
T  16822094 atgat 16822090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 17267847 - 17267794
Alignment:
Q  291 aagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagca 344  Q
    |||||||||||||| ||||||||||| ||||||  |||| ||||||||| ||||    
T  17267847 aagaaagatctagaaattaatgagttagatagaaatatggtatatgatagagca 17267794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 17275350 - 17275403
Alignment:
Q  291 aagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagca 344  Q
    |||||||||||||| ||||||||||| ||||||  |||| ||||||||| ||||    
T  17275350 aagaaagatctagaaattaatgagttagatagaaatatggtatatgatagagca 17275403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 33561030 - 33560957
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagatta 309  Q
    |||||||||||||||||||| | |||  | |||||||| | |||| |||| | ||||| |||||||||||||||    
T  33561030 tagtcaaatcactagaggcagaggaagtcctagaaaaactgtaagggaaactattaagtaagatctagagatta 33560957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 43954364 - 43954393
Alignment:
Q  294 aaagatctagagattaatgagtttgataga 323  Q
    ||||||||||||||||||||||||||||||    
T  43954364 aaagatctagagattaatgagtttgataga 43954393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 52160408 - 52160312
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||||||||||||| | |||  |  ||||||| ||||||||||| |       |||||||||| ||||| ||||||||||||  ||||||||||    
T  52160408 tagtcaaatcactagaggcatatgaagacagagaaaaactataagagaaact-------aagatctagaaattaacgagtttgatagaaatatgatatat 52160316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 10585016 - 10584968
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgatagacgtatgatatatga 337  Q
    |||||||||||| ||||||||||||||| || |||  ||||||||||||    
T  10585016 ttaagaaagatccagagattaatgagttggacagagatatgatatatga 10584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 39516024 - 39515960
Alignment:
Q  252 ggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||| ||||| |||||||||| |||| |||||| | |||||||| | ||||| |||||||||||    
T  39516024 ggcaacagaaaacttagaaaaactatacgagaaactattaagaaaaacctagaaattaatgagtt 39515960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 40920642 - 40920598
Alignment:
Q  295 aagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||||||||||||||||| ||||||  |||| |||||||||    
T  40920642 aagatctagagattaatgagttggatagaaatatggtatatgata 40920598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 40018361 - 40018258
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||||||||||||||  ||  |||||||||| ||||||| ||| ||||||||||||||||||||| |||||||| |||||   ||||||||||    
T  40018361 tagtcaaatcactagaggcaaataaagacttagaaaaactataagaaaaactgttaagaaagatctagagatcaatgagttggatagggatatgatatat 40018262  T
Q  336 gata 339  Q
    ||||    
T  40018261 gata 40018258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 42293437 - 42293326
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||||||||||||||| ||     || ||||| ||||||||||| | |||||||||||||||| ||||||||||| ||||||| |||| |||||    
T  42293437 tagtcaaatcactagaggcaaaggatgaactaaaaaaactataagagaaactattaagaaagatctagaaattaatgagttagatagacatatggtatat 42293338  T
Q  336 gatacagcatta 347  Q
    |||| |||||||    
T  42293337 gatagagcatta 42293326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 47147490 - 47147593
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacag 342  Q
    ||||||||||||| | |||  | |||||||| ||||  ||||| | |||||||||||||||||||||||||||| ||||||  |||||||||||||| |     
T  47147490 atcactagaggcagaggaagacctagaaaaactatagaagaaactattaagaaagatctagagattaatgagttggataga--tatgatatatgatagaa 47147587  T
Q  343 cattat 348  Q
    ||||||    
T  47147588 cattat 47147593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 50662528 - 50662582
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgat 320  Q
    |||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  50662528 tagaaaaattataagagaaattatttaaaaagatctagagattaatgagtttgat 50662582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 54470317 - 54470418
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||| ||||||||||||||||  |  ||||||| ||||||||||  | |||| |||| |||||||||||||||||| ||||||  |||| |||||    
T  54470317 tagtcaaattactagaggcaaaagaagaccaagaaaaactataagagaatctattaataaagttctagagattaatgagttggatagaaatatggtatat 54470416  T
Q  336 ga 337  Q
    ||    
T  54470417 ga 54470418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 38903856 - 38903789
Alignment:
Q  270 aaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatga 337  Q
    |||| ||||||||||| | |||||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  38903856 aaaactataagagaaactattaagaaagacctaaagattaatgagtttgatagagatatgatatatga 38903789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 934573 - 934491
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||| ||| ||||||| | ||||||||| |||||||||||||||||| |||||   |||||||||||||| | ||||||    
T  934573 tagaaaaactattagagaaactattaagaaagttctagagattaatgagttggatagggttatgatatatgatagaacattat 934491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 30853453 - 30853547
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatga 330  Q
    |||||||||||| ||||||||| | |  |||||||||| ||||||||||| | ||| |||| ||||| |||||||||||||  ||||| ||||||    
T  30853453 tagtcaaatcacaagaggcaaagggagacttagaaaaactataagagaaactattatgaaaaatctaaagattaatgagttgcatagaggtatga 30853547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 45569175 - 45569085
Alignment:
Q  242 aatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    |||||||||||||| | |||  | |||||| ||||||||||||| | |||||||| |||||||||| |||||||| ||||||  |||||||    
T  45569175 aatcactagaggcagaggaagacctagaaacattataagagaaactattaagaaaaatctagagatcaatgagttggatagagatatgata 45569085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 50680880 - 50680930
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  50680880 tagaaaaactataagagaaattatttagaaagatctagagattaatgagtt 50680930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 6843764 - 6843837
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||||  |||| ||||| ||| | ||||||    
T  6843764 tataagagagactattaagaaagatctagagattaatgagtttgatagaaatatgttatataatagaacattat 6843837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 55028926 - 55029043
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaa-----ttgttaagaaagatctagagattaatgagtttgatagacgtatga 330  Q
    |||||||||||||||||||| | |||   ||||||||| |||||||||||      ||||||||| |||||||||||||||||| | ||||||  ||||     
T  55028926 tagtcaaatcactagaggcataggaagagttagaaaaactataagagaaactgttatgttaagaatgatctagagattaatgagctagatagaaatatgt 55029025  T
Q  331 tatatgatacagcattat 348  Q
    ||||||||| | ||||||    
T  55029026 tatatgatagaacattat 55029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 7544654 - 7544611
Alignment:
Q  277 taagagaaattgttaagaaagatctagagattaatgagtttgat 320  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  7544654 taagagaaactattaagaaagatctagagattaatgagtttgat 7544611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 7682082 - 7681979
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||| ||||||||||||| | |||  | | |||||| ||||||||||| | | |||||| ||||| ||||||||||||| ||||||  |||| |||||    
T  7682082 tagtcacatcactagaggcagaggaagacctggaaaaactataagagaaactatcaagaaaaatctatagattaatgagttagatagaaatatggtatat 7681983  T
Q  336 gata 339  Q
    ||||    
T  7681982 gata 7681979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 21214729 - 21214646
Alignment:
Q  265 ttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||| ||||||||||| | ||||||||| |||| ||| ||||||||| || |||  |||||| ||||||| ||||||||    
T  21214729 ttagaaaaactataagagaaactattaagaaaggtctatagagtaatgagttggagagaaatatgatgtatgatagagcattat 21214646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 26356730 - 26356809
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||||||| |   |||  | |||||||| ||||||||||| ||||| ||| ||||||||||||||||||||    
T  26356730 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactgttatgaaggatctagagattaatgagtt 26356809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 10209176 - 10209226
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||||||| ||||||||||||||||||||    
T  10209176 tagaaaaactataagagaaactattaagaaggatctagagattaatgagtt 10209226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 21879292 - 21879222
Alignment:
Q  270 aaaattataagagaaattgtt-aagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||| ||||||||||| | || ||||||||||||||||| |||||||| ||||||  ||||||||||||||    
T  21879292 aaaactataagagaaactattcaagaaagatctagagatgaatgagttggatagagatatgatatatgata 21879222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 22420835 - 22420777
Alignment:
Q  290 taagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||||||||||||||||||||| ||||||  |||| || |||||| ||||||||    
T  22420835 taagaaagatctagagattaatgagttggatagagatatggtaaatgatagagcattat 22420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 33225975 - 33225925
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||||||| | ||||||||||| |||||||||| |||||    
T  33225975 tagaaaaattataagagaaactattaagaaagatttagagattaacgagtt 33225925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 37488231 - 37488285
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgat 320  Q
    |||||||| ||||||||||| | |||||||||||||||| |||||| ||||||||    
T  37488231 tagaaaaactataagagaaactattaagaaagatctagaaattaataagtttgat 37488285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 37042797 - 37042749
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  37042797 tataagagaaactattaagaaagatctagagattattgagttggataga 37042749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 42639191 - 42639080
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatg 336  Q
    ||||||||||||||||| | | |||    |||||||| |  |||||||| | ||||||||||||||| |||||||||||| ||||||  |||| ||| ||    
T  42639191 agtcaaatcactagaggtagaggaatatctagaaaaactgcaagagaaactattaagaaagatctagcgattaatgagttggatagaaatatggtatttg 42639092  T
Q  337 atacagcattat 348  Q
    ||| | ||||||    
T  42639091 atagaacattat 42639080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 43069990 - 43069903
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||| |||||||||| |||||  |||| ||||| ||| | ||||| | || |||||||||||||| ||||| |||| ||||||    
T  43069990 tagtcaaattactagaggcagaagaagacttacaaaaactatgaaagaaactattgagaaagatctagagtttaataagttggataga 43069903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 26024988 - 26024942
Alignment:
Q  270 aaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||| |||| |||||| | ||||||||||||||||||||||||||||    
T  26024988 aaaactatatgagaaactattaagaaagatctagagattaatgagtt 26024942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 31403176 - 31403094
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||| ||| ||||||| ||| | ||| ||||||||||||||||||| |||| ||||||  | || ||||||||| ||||||||    
T  31403176 tagagaaactataagaaaaactattatgaaagatctagagattaattagttggatagaaatgtggtatatgatagagcattat 31403094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 31961408 - 31961358
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||| ||||||||||||||| ||||||||    
T  31961408 tagaaaaactataagagaaactattaggaaagatctagagataaatgagtt 31961358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 34233194 - 34233116
Alignment:
Q  238 gtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||| ||||||||||||| | |||| | |||||||| ||| ||||||| | || | ||||| |||||||||||||||||    
T  34233194 gtcagatcactagaggcagaggaaaacctagaaaaactatcagagaaactattcataaagacctagagattaatgagtt 34233116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 55809132 - 55809082
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||    
T  55809132 tagaaaaactataagagaaactgttaggaaagatttagaggttaatgagtt 55809082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 41192226 - 41192271
Alignment:
Q  291 aagaaagatctagagattaatgagtttgatagacgtatgatatatg 336  Q
    |||||||||||||||||||||||||| ||||||  |||| ||||||    
T  41192226 aagaaagatctagagattaatgagttggatagaaatatggtatatg 41192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 53517640 - 53517717
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatga 313  Q
    |||||| ||||||||||||| | |||  |||||||||| | ||||||||| | | || ||||| ||||||||||||||    
T  53517640 tagtcagatcactagaggcagaggaagacttagaaaaactgtaagagaaactatcaaaaaagaactagagattaatga 53517717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 20047584 - 20047632
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||| | ||||  |||||||||||||||||||||| ||||||    
T  20047584 tataagagaaactattaaagaagatctagagattaatgagttggataga 20047632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 26025047 - 26025011
Alignment:
Q  280 gagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26025047 gagaaactattaagaaagatctagagattaatgagtt 26025011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 28550591 - 28550543
Alignment:
Q  272 aattataagagaaattgttaagaaagatctagagattaatgagtttgat 320  Q
    |||||||||||||| | ||| ||||||| ||||| ||||||||||||||    
T  28550591 aattataagagaaactattaggaaagatttagaggttaatgagtttgat 28550543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 40654268 - 40654196
Alignment:
Q  267 agaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    ||||||||||||| ||||| | | ||||||||| || ||||||||||||| |||| |  |||||||| |||||    
T  40654268 agaaaaattataaaagaaactatcaagaaagatgtaaagattaatgagttagatataaatatgatatttgata 40654196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 44047490 - 44047458
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgata 321  Q
    |||||||||||||||||||||||||||| ||||    
T  44047490 ttaagaaagatctagagattaatgagttggata 44047458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 44667417 - 44667337
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||||||| |||||  | | |||||| ||||  ||||| | | |||||| ||||||||||||| |||||    
T  44667417 tagtcaaatcactagaggcagaagaagacctcgaaaaactatattagaaactatcaagaaaaatctagagattaacgagtt 44667337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 55771631 - 55771707
Alignment:
Q  240 caaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||||||||| |||   ||| ||||| |||||| |||| |  |||| ||||||||||||||||||||||    
T  55771631 caaatctctagaggcaaaggaagatttaaaaaaactataagtgaaacttgtaaggaagatctagagattaatgagtt 55771707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 55835867 - 55835943
Alignment:
Q  240 caaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||||||||| |||   ||| ||||| |||||| |||| |  |||| ||||||||||||||||||||||    
T  55835867 caaatctctagaggcaaaggaagatttaaaaaaactataagtgaaacttgtaaggaagatctagagattaatgagtt 55835943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 18188862 - 18188958
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    |||||||||||||||||||||| | |  |||||||||||||||||||||| | || ||||||||||||||||||||||| | ||||||  |||||||    
T  18188862 tagtcaaatcactagaggcaaagggagacttagaaaaattataagagaaactattcagaaagatctagagattaatgagctggatagaaatatgata 18188958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 41779249 - 41779179
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||  |||||  ||||||||||||||    
T  41779249 aaaaattataagagaaattattaaaaaagatctagagattaatgagttgaatagagatatgatatatgata 41779179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 26784512 - 26784409
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaag-cttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatata 334  Q
    |||||||||||||||||||| | ||||| | |||||||| ||||||||||| | ||||||||||| ||||||||||||||||  |||||  |||| ||||    
T  26784512 tagtcaaatcactagaggcaga-gaaagacctagaaaaactataagagaaactattaagaaagatatagagattaatgagttgaatagaaatatggtata 26784414  T
Q  335 tgata 339  Q
    |||||    
T  26784413 tgata 26784409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 38860288 - 38860368
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||| |||||||||| | |||  ||| ||||||| |||||||||| | |||||||||||||||||||| |||||||    
T  38860288 tagtcaaattactagaggcagacgaagacttggaaaaatgataagagaaactattaagaaagatctagagattcatgagtt 38860368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 12026147 - 12026081
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    |||| ||| |||| |||||| | |||||||||||||||||||||||||||||||||||  |||||||    
T  12026147 tagagaaactataggagaaactattaagaaagatctagagattaatgagtttgatagaaatatgata 12026081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 29548776 - 29548722
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  29548776 aaaaactataagagaaattattaagaaagatttagagattaatgtgtttgataga 29548722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 8197671 - 8197610
Alignment:
Q  278 aagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||| | |||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  8197671 aagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgata 8197610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 8202431 - 8202370
Alignment:
Q  278 aagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||| | |||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  8202431 aagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgata 8202370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 33504333 - 33504446
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagaga-ttaatgagtttgatagacgtatgatata 334  Q
    |||||| ||||||||||||| |  ||| | |||||||| ||||||||||| | |||||||||||||||||| ||||| |||| ||| ||  |||| ||||    
T  33504333 tagtcagatcactagaggcagagaaaaacctagaaaaactataagagaaactattaagaaagatctagagatttaataagttggattgaaatatggtata 33504432  T
Q  335 tgatacagcattat 348  Q
    ||||| | ||||||    
T  33504433 tgatagaacattat 33504446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 19235155 - 19235069
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||||||||  | | |||  | |||||||| ||||||||||| | || |||||||||||||||||||||| || ||||||    
T  19235155 agtcaaatcactagagatagaggaagacctagaaaaactataagagaaactattgagaaagatctagagattaatgatttggataga 19235069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 33287561 - 33287611
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | |||||||||||||||| |||||||||||    
T  33287561 tagaaaaactataagagaaactattaagaaagatctagaaattaatgagtt 33287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 1626344 - 1626385
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  1626344 tataagagaaactattaagaaagatctagagattaatgagtt 1626385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 9556541 - 9556461
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||  |||||||||||| |||  | | |||||| ||||||| ||| | ||||||||||||||| ||||||||||||    
T  9556541 tagtcaaactactagaggcaaaggaagaccttgaaaaactataagataaactattaagaaagatctagtgattaatgagtt 9556461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 19024289 - 19024373
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgata 321  Q
    |||||||||| |||||| | | ||| || ||||| ||  |||||||||| | |||||||||||||| ||||||||||||| ||||    
T  19024289 agtcaaatcattagaggtataggaaggcgtagaagaaccataagagaaactattaagaaagatctaaagattaatgagttggata 19024373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 38435062 - 38435138
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatg 312  Q
    |||||| ||||||||||||| | | |  | |||||||| || |||||||| | ||||||||||||||||||||||||    
T  38435062 tagtcagatcactagaggcagaggtagacctagaaaaactacaagagaaactattaagaaagatctagagattaatg 38435138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 2807585 - 2807632
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatga 313  Q
    |||||||||||||||||||||| | ||||| |||| ||||||||||||    
T  2807585 tagaaaaattataagagaaattatcaagaaggatccagagattaatga 2807632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 43832247 - 43832293
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgata 321  Q
    ||||||||||| | ||||||| |||||||||||||||||||| ||||    
T  43832247 tataagagaaactattaagaaggatctagagattaatgagttggata 43832293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 41022523 - 41022486
Alignment:
Q  278 aagagaaattgttaagaaagatctagagattaatgagt 315  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  41022523 aagagaaactgttaagaatgatctagagattaatgagt 41022486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 42149793 - 42149720
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||||| | ||||||||||||||||||||| |||| | ||||||  |||| | ||||||| | ||||||    
T  42149793 tataagagaaactattaagaaagatctagagattattgagctggatagaaatatggtttatgatagaacattat 42149720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 31254451 - 31254499
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgatagacgtatgatatatga 337  Q
    ||||||||||||||||||||||||||||  |||||  |||||| |||||    
T  31254451 ttaagaaagatctagagattaatgagttgaatagaaatatgatttatga 31254499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 42582559 - 42582523
Alignment:
Q  287 tgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||| |||||| |||||||||||||||||||||||    
T  42582559 tgttaaaaaagatgtagagattaatgagtttgataga 42582523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 79137 - 79224
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||||||||||| ||| | ||| ||||||||| | ||||||||||| | |||||||||||||||||||||||||| | ||||||    
T  79137 tagtcaaatcactagaagcagaggaaggcttagaaacactataagagaaactattaagaaagatctagagattaatgagctggataga 79224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 10080078 - 10079976
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatg 336  Q
    ||||||||||||||||| | | |||  | |||| ||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||||||| ||    
T  10080078 agtcaaatcactagaggtagaggaagacctagagaaactataagaaaaactgttaagaaagatctagagattaatgagttggatagaaatatgatatttg 10079979  T
Q  337 ata 339  Q
    |||    
T  10079978 ata 10079976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 24399961 - 24399881
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||| |||||||||| |  ||| |||||||||||||||||||||| | ||||||| ||||| ||||||||||||||    
T  24399961 tagtcaaattactagaggcagagcaaaacttagaaaaattataagagaaactattaagaaggatctcgagattaatgagtt 24399881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 35643778 - 35643698
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| || |||||||||| | |||  | |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  35643778 tagtcagattactagaggcagaggaagacctagaaaaactataagagaaattattaagaaagatctagagattaatgagtt 35643698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 10108953 - 10109035
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||  |||||||||| |  ||||||||||||||||||||| ||||||||||||  |||| ||||||||| | ||||||    
T  10108953 tagaaaaaccataagagaaactaataagaaagatctagagattaacgagtttgatagagatatgttatatgatagaacattat 10109035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 38178432 - 38178331
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||| ||||||| | | |||  | |||||||| ||||||||||| | |||| ||||| ||||| ||||||||||| ||||||  ||||||||||    
T  38178432 tagtcaaatcgctagaggtagaggaagacctagaaaaactataagagaaactattaacaaagacctagacattaatgagttggatagagatatgatatat 38178333  T
Q  336 ga 337  Q
    ||    
T  38178332 ga 38178331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 16715383 - 16715495
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||||||| |||| | ||| || ||||||  ||||||||||||   | ||||| |||| ||||||||||| |||||||||   ||||||||||    
T  16715383 tagtcaaatcactagtggcagaggaaggcctagaaagtttataagagaaaccatcaagaaggatcaagagattaatgggtttgatagggatatgatatat 16715482  T
Q  336 gatacagcattat 348  Q
    |||| | ||||||    
T  16715483 gatagaacattat 16715495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 24740020 - 24739924
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    |||||||||||| ||||||| | ||   | |||||||||||||||||||| | || |||||||| ||||||||||| |||| ||||||  |||||||    
T  24740020 tagtcaaatcaccagaggcacatgacgacctagaaaaattataagagaaactattgagaaagatgtagagattaatcagttggatagagatatgata 24739924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 30198410 - 30198358
Alignment:
Q  264 cttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||||||||||    
T  30198410 cttagaaaaactataagagaaattattaagaaagatattgagattaatgagtt 30198358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 4011223 - 4011278
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgata 321  Q
    |||||||| ||||||||||| | |||||||||||||| ||||||||||||| ||||    
T  4011223 tagaaaaactataagagaaactattaagaaagatctaaagattaatgagttggata 4011278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 39967641 - 39967591
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||||||||||||||| ||||||||||||    
T  39967641 tagaaaaactataagagaaactattaagaaagatctagcgattaatgagtt 39967591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 23023365 - 23023438
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||| ||||||||||| |  ||||||||||||| ||||||||||||| |||||    |||||||||||||    
T  23023365 tagaaaaactataagagaaactactaagaaagatctacagattaatgagttggataggaacatgatatatgata 23023438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 3645235 - 3645275
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagt 315  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  3645235 tataagagaaactgttaagaaagacctagagattaatgagt 3645275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 29520760 - 29520839
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||| ||||| | | ||| || |||||||| ||||||||||| ||||| ||| ||| ||||||||||||||||    
T  29520760 tagtcaaatcacaagaggtagaggaa-gcctagaaaaactataagagaaactgttaggaacgatttagagattaatgagtt 29520839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 34196551 - 34196587
Alignment:
Q  277 taagagaaattgttaagaaagatctagagattaatga 313  Q
    ||||||||||||||||||| |||||||||||||||||    
T  34196551 taagagaaattgttaagaaggatctagagattaatga 34196587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 45512667 - 45512587
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||||||| | |||  | |||||||| ||||||||||| | ||| ||||||  | ||||||||||||||    
T  45512667 tagtcaaatcactagaggcagaggaagacctagaaaaactataagagaaactattaggaaagacttggagattaatgagtt 45512587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 24558624 - 24558671
Alignment:
Q  267 agaaaaattataagagaaattgttaagaaagatctagagattaatgag 314  Q
    |||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  24558624 agaaaaacaataagagaaattattaagaaagatttagagattaatgag 24558671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 11733899 - 11733969
Alignment:
Q  278 aagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||| | | |||||| ||||||||||||||||||| ||||||  |||| ||| ||||| ||||||||    
T  11733899 aagagaaactataaagaaaaatctagagattaatgagttagatagaaatatggtatgtgatagagcattat 11733969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 16351518 - 16351568
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||| ||||||| | ||||||| ||||||||||||||||||||    
T  16351518 tagaaaaactattagagaaactattaagaaggatctagagattaatgagtt 16351568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 33666689 - 33666655
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||||| ||||||||||||||||||||||||    
T  33666689 ttaagaaagacctagagattaatgagtttgataga 33666655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 39388922 - 39388980
Alignment:
Q  266 tagaaaaattataa-gagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||| ||||| |||||| | ||| |||||||||||||||||||||||| ||||||    
T  39388922 tagaaaaactataaagagaaactattaggaaagatctagagattaatgagttggataga 39388980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 44175275 - 44175325
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||||||||||||||| ||||||| | ||||  ||||||||||||||    
T  44175275 ttaagaaagatctagagattgatgagttgggtagagatatgatatatgata 44175325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 16971926 - 16971846
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||| ||||||||||| |||   |||| |||||||||| |||||||||||   ||||||| ||| || |||||||||||||    
T  16971926 tagtgaaatcactagatgcacgggaaaacttagaaaaactataagagaaacgattaagaaggatataaagattaatgagtt 16971846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 30783174 - 30783134
Alignment:
Q  276 ataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||| | || |||||||||||||||||||||||||    
T  30783174 ataagagaaactatttagaaagatctagagattaatgagtt 30783134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 32400245 - 32400318
Alignment:
Q  238 gtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaat 311  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||| || |||||||||| ||||||| |||||    
T  32400245 gtcaaatcactagaggcggaagaaggcttagaaaaattataagagagatcgttaagaaagttctagagtttaat 32400318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 10617405 - 10617326
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||||||| | |||||| | |||||||| |||||||||||   ||||||| ||||||||||||||||||||    
T  10617405 agtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaaggatctagagattaatgagtt 10617326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 35199765 - 35199683
Alignment:
Q  265 ttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||||||| ||||||  |||| ||||||||| | ||||||    
T  35199765 ttagaaaaattataaaagaaactattaggaaagatctagagattaatgagttagatagaaatatg-tatatgatagaacattat 35199683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 1747813 - 1747712
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||  ||||||||| | |||  | ||||||||  |||||||||| || |||||| |||||||||||||||||||| |||| |  ||||||||||    
T  1747813 tagtcaaatttctagaggcagaggaagacctagaaaaaccataagagaaactggtaagaaggatctagagattaatgagttggataaagatatgatatat 1747714  T
Q  336 ga 337  Q
    ||    
T  1747713 ga 1747712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 34670 - 34597
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||| | |||  | |||||||| |||||||||||   |||||||||||||| |||||||||||||    
T  34670 atcactagaggcagaggaagacctagaaaaactataagagaaaccattaagaaagatctaaagattaatgagtt 34597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 31832008 - 31831951
Alignment:
Q  259 gaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| |||||||| ||| ||||||| | ||||||||||||||||||||| ||||||    
T  31832008 gaaagcctagaaaaactatcagagaaactattaagaaagatctagagattactgagtt 31831951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 1681660 - 1681613
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||| |||||||||||| | ||||||| ||||||||||||||||||||    
T  1681660 aaaagttataagagaaactattaagaaggatctagagattaatgagtt 1681613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 5053637 - 5053746
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||||| |||||||| |||  | ||||||  |||||||||||| |||||  ||||||  ||||||||||||||| | |||   |||| |||||    
T  5053637 tagtcaaatcactcgaggcaaaggaagacctagaaag-ttataagagaaactgttaccaaagattcagagattaatgagttggttaggaatatggtatat 5053735  T
Q  336 gatacagcatt 346  Q
    |||| ||||||    
T  5053736 gataaagcatt 5053746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 348
Target Start/End: Complemental strand, 6293534 - 6293452
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||| || || ||||| | ||| |||| ||||||| ||||||||||| ||||||  |||| ||||||||| ||||||||    
T  6293534 tagaaaaactaaaatagaaactattaggaaatatctagatattaatgagttagatagaaatatggtatatgatagagcattat 6293452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 9593850 - 9593800
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||||||| | ||| ||||||  ||||||||||||||||    
T  9593850 tagaaaaattataagagaaactattaggaaagacttagagattaatgagtt 9593800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 55244387 - 55244500
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattat-aagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatata 334  Q
    ||||||||||||||||||| || |||  | |||||||| | | |||||||||| |||||||| ||||||||||||||||||| ||||||  |||| ||||    
T  55244387 tagtcaaatcactagaggccaaggaagacctagaaaaactcttaagagaaattcttaagaaaaatctagagattaatgagttggatagaaatatggtata 55244486  T
Q  335 tgatacagcattat 348  Q
    ||||| | ||||||    
T  55244487 tgatagaacattat 55244500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 40982006 - 40982102
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    ||||||||||||||||| |||| |||  | |||||||| |||||||| || | |||||||||||||||| ||||||| ||| ||||||  |||||||    
T  40982006 tagtcaaatcactagagacaaaggaagacctagaaaaactataagagtaactattaagaaagatctagatattaatgtgttggatagatatatgata 40982102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 46431821 - 46431749
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgat 338  Q
    |||||||| ||||||||||| | |||| ||||||||||||||||||||||| ||||||  ||| |||||||||    
T  46431821 tagaaaaactataagagaaactattaaaaaagatctagagattaatgagttggatagagatattatatatgat 46431749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 36820119 - 36820069
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  36820119 tagaaaaactataagagaaactattaagaaagatctagagattaatgagtt 36820069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 43308702 - 43308775
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||| || |||||||| | |||||||| |||||||||||||| |||| ||||||  ||||||||||||||    
T  43308702 tagaaaaactacaagagaaactattaagaaaaatctagagattaatcagttggatagagatatgatatatgata 43308775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 37598341 - 37598230
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||| ||||||| ||||||| ||||   | |||||||| | ||||||||| | |||||| | ||||||||||||||||||| |||||  |||||||||||    
T  37598341 tagttaaatcaccagaggcagaagatgacctagaaaaact-taagagaaactattaagatatatctagagattaatgagttggataggggtatgatatat 37598243  T
Q  336 gatacagcattat 348  Q
    |||| | ||||||    
T  37598242 gatagaacattat 37598230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 11581555 - 11581634
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||||||| |  ||||  | |||||||| ||||||||||| | |||||||||||||| |||| ||||||||    
T  11581555 agtcaaatcactagaggtatgagaagacctagaaaaactataagagaaactattaagaaagatctatagataaatgagtt 11581634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 2340855 - 2340810
Alignment:
Q  270 aaaattataagagaaattgttaagaaagatctagagattaatgagt 315  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||    
T  2340855 aaaactataagagaaactattaagaaagatctagagattaatgagt 2340810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 40116640 - 40116560
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| |||||||||| |||| |||  | |||||||| ||||||||||| | ||| || |||| ||||||||||||||||    
T  40116640 tagtcagatcactagagccaaaggaagacctagaaaaactataagagaaactattaggatagatttagagattaatgagtt 40116560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 44443346 - 44443290
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||||||| ||||||||||| | ||||||| |||||||||||| ||||||| |||||    
T  44443346 tagaaaaactataagagaaacttttaagaatgatctagagattgatgagttggatag 44443290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 41452882 - 41452827
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgata 321  Q
    |||||||| ||||||  ||| | |||||||||||||||||||||||||||| ||||    
T  41452882 tagaaaaactataagttaaactattaagaaagatctagagattaatgagttggata 41452827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 2198978 - 2199028
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||| ||||||||| ||||||| || ||||| |||||||||||    
T  2198978 tagaaaaattattagagaaattattaagaacgacctagatattaatgagtt 2199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 7278599 - 7278645
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatg 312  Q
    |||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  7278599 tagaaaaactataagagaaactgttacgaaagatctagagatcaatg 7278645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 39600823 - 39600773
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||||||||||| ||||| ||||||||||    
T  39600823 tagaaaaactataagagaaactattaagaaagatttagaggttaatgagtt 39600773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 21427723 - 21427669
Alignment:
Q  267 agaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||||||||||| | |||||||||| ||||||||  ||||||| ||||||    
T  21427723 agaaaaattataagagaaactattaagaaagacctagagat--atgagttggataga 21427669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 33755507 - 33755434
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||| | |||| | |||||||| ||||||||||| | ||| |||| |  ||||||||||||||||    
T  33755507 atcactagaggcagaggaaaacctagaaaaactataagagaaactattaggaaaaacttagagattaatgagtt 33755434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 44133983 - 44133938
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgag 314  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||||    
T  44133983 aaaaattataagagaaactattaagatagatctaaagattaatgag 44133938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 33700332 - 33700380
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||  | |||||||| ||||||||||||||||||| ||||||    
T  33700332 tataagagaagctattaagaaatatctagagattaatgagttagataga 33700380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 41087886 - 41087934
Alignment:
Q  268 gaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||| ||||||| ||||||| ||| ||||||||||||||||    
T  41087886 gaaaaactataaaagaaattattaagaaggatttagagattaatgagtt 41087934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 47804835 - 47804755
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||||| |||||| |  ||| ||||||||||  | | ||||||   ||||||||||| ||||||||||||||||    
T  47804835 tagtcaaatcacttgaggcagagaaaaacttagaaaaaccacatgagaaacgattaagaaagatttagagattaatgagtt 47804755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 49841766 - 49841838
Alignment:
Q  276 ataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||||| | |||| ||||||||| ||||||||||||| ||| ||  |||| ||||||||| | ||||||    
T  49841766 ataagagaaactattaacaaagatctaaagattaatgagttggatcgaaatatggtatatgatagaacattat 49841838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 11907 - 11986
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagt 315  Q
    |||| |||||||||||||||||||||    |||||||| ||||||||||| | ||||||| |||||||||||||||||||    
T  11907 tagtgaaatcactagaggcaaaagaagaactagaaaaactataagagaaactattaagaaggatctagagattaatgagt 11986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 338
Target Start/End: Original strand, 18698904 - 18699006
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||||||||||||| | |||  | |||||||| ||||||||||  | | ||||||||||||||||||| |||||| ||||||  |||| |||||    
T  18698904 tagtcaaatcactagaggcagaggaatacctagaaaaactataagagaatgtatcaagaaagatctagagattagtgagttggatagaaatatgttatat 18699003  T
Q  336 gat 338  Q
    |||    
T  18699004 gat 18699006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 30588587 - 30588637
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  30588587 tagaaaaactataagagaaattgttaagaaagatctagagatgaatgagtt 30588637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 12577025 - 12576920
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacag 342  Q
    ||||||||||||| | |||  | |||||||| || |||| ||| | ||||||||||||||||||||||||||||  |||||  |||| ||||||||| |     
T  12577025 atcactagaggcagaggaagacctagaaaaactacaagataaactattaagaaagatctagagattaatgagttgaatagaaatatggtatatgatagac 12576926  T
Q  343 cattat 348  Q
    ||||||    
T  12576925 cattat 12576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 7359432 - 7359352
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||||||||||| | |||||| ||||||||  |||||||||| | || ||||| |||||||||||||| ||||    
T  7359432 tagtcatatcactagaggcagaggaaagcctagaaaaaccataagagaaactatttagaaaaatctagagattaataagtt 7359352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 4026497 - 4026414
Alignment:
Q  239 tcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||| ||||||||| || | ||| || |||||||| || ||||||||||||||||||||||  ||| ||||||| |||||||||    
T  4026497 tcaactcactagagtcagaggaaggcctagaaaaactaaaagagaaattgttaagaaagatacagaaattaatgggtttgatag 4026414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 14749418 - 14749504
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||||||| ||||| | |||  | |||||||| ||||||||||| | | ||||| |||||||||||||| ||||| ||||||    
T  14749418 agtcaaatcactaaaggcagaggaagacctagaaaaactataagagaaactatcaagaaggatctagagattaacgagttggataga 14749504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 28005698 - 28005748
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    ||||||||||||||||||||||||||||||||||   ||||||||| ||||    
T  28005698 ttaagaaagatctagagattaatgagtttgatagggatatgatatacgata 28005748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 33667575 - 33667625
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| |||||||||| || ||||||| ||||||||||||||||||||    
T  33667575 tagaaaaactataagagaagttattaagaaggatctagagattaatgagtt 33667625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 3775239 - 3775162
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatga 313  Q
    |||||||||||||||||||| |||||  | |||||||| ||||||| ||| | ||||||||  ||||| |||||||||    
T  3775239 tagtcaaatcactagaggcagaagaagacctagaaaaactataagataaactattaagaaaagtctagggattaatga 3775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 14667888 - 14667961
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||   |||| | |||||||| ||||||||||  |  |||||||||||||||||||||||||||    
T  14667888 atcactagaggcagcggaaatcctagaaaaactataagagaagctactaagaaagatctagagattaatgagtt 14667961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 27998581 - 27998654
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||| ||||||||||| |  ||||||||||||| ||||||||||||| |||||    |||||||||||||    
T  27998581 tagaaaaactataagagaaactactaagaaagatctacagattaatgagttagataggaacatgatatatgata 27998654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 38684620 - 38684677
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||| || |||||||| | ||||||||||||||||||||||| |||| ||||||    
T  38684620 tagaaaaactacaagagaaacttttaagaaagatctagagattaattagttggataga 38684677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 36123354 - 36123242
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||| |||||||||||| ||| |||  |||||||||  |||||| ||||   | ||||| ||||||||||||||||||||   |||  |||||||||||    
T  36123354 tagtcgaatcactagaggtaaaggaagacttagaaaagctataagggaaaccatcaagaaggatctagagattaatgagttatgtaggggtatgatatat 36123255  T
Q  336 gatacagcattat 348  Q
    |||| | ||||||    
T  36123254 gatagaacattat 36123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 43475350 - 43475429
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| ||||||| ||| ||||| || | |||||||| | ||||||||| | |||||||||||| |||||||||||||||    
T  43475350 tagtcagatcactataggaaaaagtaaacatagaaaaact-taagagaaactattaagaaagatccagagattaatgagtt 43475429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 2066137 - 2066192
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgata 321  Q
    |||||||||||||| ||||| |  ||| ||||||||||||||||||||||| ||||    
T  2066137 tagaaaaattataaaagaaactactaaaaaagatctagagattaatgagttggata 2066192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 2713055 - 2713134
Alignment:
Q  237 agtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||| ||   |||  | |||||||| ||||||||||| | ||||||| ||||||||||| ||||||||    
T  2713055 agtcaaatcactagagtcaggggaagacctagaaaaactataagagaaactattaagaaggatctagagatgaatgagtt 2713134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 28186906 - 28186851
Alignment:
Q  277 taagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgata 332  Q
    ||||||||| | ||||||||||| |||||||||||||||| ||||||  |||||||    
T  28186906 taagagaaactattaagaaagatttagagattaatgagttggatagagatatgata 28186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 6889103 - 6889183
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| |||| |||| | | ||| || |||||||| ||||||||||| | ||| ||||||| ||||||||||| ||||    
T  6889103 tagtcaaaccacttgaggaagaggaaggcctagaaaaactataagagaaactattaggaaagatttagagattaattagtt 6889183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 7678628 - 7678668
Alignment:
Q  276 ataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||| | || |||||||||||||||||||||||||    
T  7678628 ataagagaaactatttagaaagatctagagattaatgagtt 7678668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 17340580 - 17340524
Alignment:
Q  264 cttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgat 320  Q
    ||||||||||||||||  | || | ||||||||||| ||||| ||||||||||||||    
T  17340580 cttagaaaaattataattgtaactattaagaaagatttagaggttaatgagtttgat 17340524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 29922424 - 29922468
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaa 310  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||    
T  29922424 tagaaaaactataagagaaactattaagaaagatttagagattaa 29922468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 66677 - 66733
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||    
T  66677 tagaaaaattataaaaaaaattattaagaaagatctagagattaatgagttagatag 66733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 29653687 - 29653619
Alignment:
Q  267 agaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||| | ||||||||| | |||||||||||||||||||||||||||| ||||||  ||||||||||    
T  29653687 agaaaaactgtaagagaaactattaagaaagatctagagattaatgagttagatagaaatatgatatat 29653619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 40139079 - 40139017
Alignment:
Q  277 taagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||  ||||| ||||||||    
T  40139079 taagagaaactattaagaaagatctagagattaatgcgtttgatagaaatatgacatatgata 40139017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 22174117 - 22174222
Alignment:
Q  243 atcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacag 342  Q
    ||||||||||||| | |||| | |||||||| ||||||||||| | | || |||||||||||||||||||| || ||||||  |||| ||| ||||| |     
T  22174117 atcactagaggcagaggaaaacgtagaaaaactataagagaaactataaacaaagatctagagattaatgaattagatagaaatatggtatgtgatagaa 22174216  T
Q  343 cattat 348  Q
    ||||||    
T  22174217 cattat 22174222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 323
Target Start/End: Original strand, 28858157 - 28858242
Alignment:
Q  238 gtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    |||||||||||| || ||||  ||  |||||||||| ||||||| ||| | ||||||||||||||||||||||| |||| ||||||    
T  28858157 gtcaaatcactatagacaaagtaagacttagaaaaactataagacaaactattaagaaagatctagagattaataagttggataga 28858242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 30144887 - 30144971
Alignment:
Q  238 gtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 322  Q
    ||||||||||||||| ||||| ||  | || ||||| |||  |||||| | |||||||||||||||||||||||||||| |||||    
T  30144887 gtcaaatcactagagacaaaataagacctataaaaactattcgagaaactattaagaaagatctagagattaatgagttggatag 30144971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 30200083 - 30200024
Alignment:
Q  289 ttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||||||||||||||||||||||||||| |  |||| ||||||||| | ||||||    
T  30200083 ttaagaaagatctagagattaatgagtttgatataaatatggtatatgatagaccattat 30200024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 1569156 - 1569206
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| |||||||| || | ||||||||||||||||||||||||||||    
T  1569156 tagaaaaactataagagtaactattaagaaagatctagagattaatgagtt 1569206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 12966156 - 12966238
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    |||||||| ||||||||||| | |||||||| || ||||||||||||| || ||||||  |||| ||||||||| | ||||||    
T  12966156 tagaaaaactataagagaaactattaagaaatatttagagattaatgatttggatagaaatatggtatatgataaatcattat 12966238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 36193838 - 36193729
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||||||||||||||||||| ||  | ||||||| |||||||||| | | |||| ||||||  ||||||||||||||| || ||   |||| |||||    
T  36193838 tagtcaaatcactagaggcaaaaaaacacctagaaaa-ttataagagagactattaacaaagattcagagattaatgagttggacaggaatatggtatat 36193740  T
Q  336 gatacagcatt 346  Q
    |||| ||||||    
T  36193739 gataaagcatt 36193729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 44401267 - 44401217
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||||||||||| | ||||||||||| |||||||||| |||||    
T  44401267 tagaaaaattataagagaaactattaagaaagatttagagattaacgagtt 44401217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 45601616 - 45601666
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| |||||||||||   ||||||||||||||||||||||||||||    
T  45601616 tagaaaaactataagagaaaccattaagaaagatctagagattaatgagtt 45601666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 24549821 - 24549780
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  24549821 tataagagaaactattaagaaagatctagagattaatgagtt 24549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 9191928 - 9191984
Alignment:
Q  279 agagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    ||||||| | ||||||||||||||||||||||| | |||||||||  ||||||||||    
T  9191928 agagaaactattaagaaagatctagagattaataaatttgatagaaatatgatatat 9191984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 28628105 - 28628025
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||| ||||| | | |||  | |||||||| ||||||||||| | ||| ||||||| ||||||||||||||||    
T  28628105 tagtcaaatcacaagaggtagaggaagacctagaaaaactataagagaaactattaggaaagatttagagattaatgagtt 28628025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 30814843 - 30814771
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagatt 308  Q
    |||||| ||||||||||||| | |||  | |||||| | ||||||||||| | ||||||||||||||||||||    
T  30814843 tagtcagatcactagaggcagaggaagacctagaaacactataagagaaactattaagaaagatctagagatt 30814771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 38135385 - 38135305
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||| |||| |||||||| | |||  | |||||||| ||||||||||| | |||| |||||| ||||||||||||||||    
T  38135385 tagtcagatcattagaggcagatgaagacctagaaaaagtataagagaaactattaaaaaagatttagagattaatgagtt 38135305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 48202874 - 48202794
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    ||||||||||| || ||||| | ||| || |||||||| ||||||||| || |||||||||| | ||||| ||||||||||    
T  48202874 tagtcaaatcattataggcagaggaaggcctagaaaaactataagagagatcgttaagaaagttgtagagtttaatgagtt 48202794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 30664688 - 30664758
Alignment:
Q  246 actagaggcaaaagaaagct-tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||||||| ||||| | |||||| | ||||| ||||| | ||||||||||||||||||||||||||||    
T  30664688 actagaggcaaa-gaaagatctagaaagactataaaagaaactattaagaaagatctagagattaatgagtt 30664758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 32368509 - 32368407
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatat 335  Q
    |||||||||||||||||||||| |||    |||||||  ||||||||||  | ||||| ||||| ||||||||| |||||| ||| ||  |||| |||||    
T  32368509 tagtcaaatcactagaggcaaaggaagatctagaaaatctataagagaagctattaaggaagatttagagattagtgagttggatcgaaatatggtatat 32368410  T
Q  336 gat 338  Q
    |||    
T  32368409 gat 32368407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 41461242 - 41461296
Alignment:
Q  269 aaaaattataagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||| ||||||||||| | |||| |||||||||| |||||||||||| ||||||    
T  41461242 aaaaactataagagaaactattaataaagatctagtgattaatgagttggataga 41461296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 42103652 - 42103606
Alignment:
Q  277 taagagaaattgttaagaaagatctagagattaatgagtttgataga 323  Q
    ||||||||| |||||||||||||| |||| |||||||||| ||||||    
T  42103652 taagagaaactgttaagaaagatcaagaggttaatgagttggataga 42103606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 40830312 - 40830392
Alignment:
Q  236 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||| |||||||||||| || | |||  | |||||||  ||||||||||| | ||||||| |||||||| |||||||||||    
T  40830312 tagtgaaatcactagagacagaggaagacctagaaaatctataagagaaactattaagaaggatctagaaattaatgagtt 40830392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 41578244 - 41578192
Alignment:
Q  287 tgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgata 339  Q
    |||||||||| || ||||||||| |||||| ||||||  ||||||||||||||    
T  41578244 tgttaagaaacatatagagattagtgagttggatagagatatgatatatgata 41578192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 42177160 - 42177088
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgat 338  Q
    |||||||  ||||||||||  | ||||||||||||||||||| ||||||||| ||| |  |||| ||||||||    
T  42177160 tagaaaacctataagagaatctattaagaaagatctagagataaatgagtttcataaaaatatggtatatgat 42177088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 2434 - 2361
Alignment:
Q  275 tataagagaaattgttaagaaagatctagagattaatgagtttgatagacgtatgatatatgatacagcattat 348  Q
    ||||||||| | | |||||||||||||||||||||||||||||||||||  |||| ||||| ||| | ||||||    
T  2434 tataagagagactattaagaaagatctagagattaatgagtttgatagaaatatgttatataatagaacattat 2361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 178562 - 178512
Alignment:
Q  266 tagaaaaattataagagaaattgttaagaaagatctagagattaatgagtt 316  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||||||||    
T  178562 tagaaaaactataagagaaactattaagaaagatatagagattaatgagtt 178512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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