View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4115_low_9 (Length: 548)

Name: NF4115_low_9
Description: NF4115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4115_low_9
NF4115_low_9
[»] chr7 (8 HSPs)
chr7 (455-537)||(12719930-12720012)
chr7 (329-417)||(12719802-12719890)
chr7 (222-301)||(20896265-20896344)
chr7 (232-327)||(29366360-29366455)
chr7 (222-291)||(3565369-3565438)
chr7 (221-289)||(27569474-27569542)
chr7 (220-301)||(37327548-37327629)
chr7 (263-327)||(42457376-42457440)
[»] chr4 (12 HSPs)
chr4 (329-417)||(17982442-17982530)
chr4 (221-327)||(44362910-44363016)
chr4 (221-301)||(44363374-44363454)
chr4 (221-332)||(6216196-6216306)
chr4 (232-301)||(1351517-1351586)
chr4 (220-316)||(11995979-11996075)
chr4 (221-301)||(12499265-12499345)
chr4 (232-327)||(12499024-12499119)
chr4 (221-327)||(18879313-18879419)
chr4 (244-322)||(51871829-51871907)
chr4 (274-327)||(36061068-36061121)
chr4 (275-327)||(1351319-1351371)
[»] chr2 (3 HSPs)
chr2 (329-417)||(2996186-2996274)
chr2 (349-416)||(43619436-43619503)
chr2 (220-289)||(964101-964170)
[»] chr6 (4 HSPs)
chr6 (334-417)||(32220881-32220963)
chr6 (235-303)||(4838052-4838120)
chr6 (232-301)||(6196709-6196778)
chr6 (275-327)||(2236793-2236845)
[»] chr3 (11 HSPs)
chr3 (327-416)||(16362517-16362606)
chr3 (240-301)||(43071791-43071852)
chr3 (222-301)||(14742203-14742282)
chr3 (329-416)||(16359696-16359782)
chr3 (221-327)||(25189622-25189728)
chr3 (222-327)||(38216307-38216412)
chr3 (221-300)||(38216079-38216159)
chr3 (232-300)||(49726654-49726722)
chr3 (221-327)||(39450618-39450724)
chr3 (220-301)||(38018458-38018539)
chr3 (275-327)||(38018300-38018352)
[»] chr1 (9 HSPs)
chr1 (221-327)||(43344797-43344903)
chr1 (222-327)||(44166457-44166562)
chr1 (220-315)||(15061447-15061542)
chr1 (329-380)||(34080060-34080111)
chr1 (221-301)||(38276007-38276085)
chr1 (233-327)||(38275767-38275861)
chr1 (220-301)||(7191861-7191941)
chr1 (232-301)||(9388803-9388872)
chr1 (221-325)||(43670695-43670799)
[»] chr5 (4 HSPs)
chr5 (220-297)||(11488848-11488925)
chr5 (222-301)||(13639616-13639695)
chr5 (244-301)||(5548110-5548167)
chr5 (220-281)||(36201735-36201796)
[»] scaffold0157 (2 HSPs)
scaffold0157 (221-301)||(21132-21212)
scaffold0157 (232-327)||(21358-21453)
[»] chr8 (7 HSPs)
chr8 (232-284)||(20771693-20771745)
chr8 (232-284)||(20781487-20781539)
chr8 (222-286)||(39186152-39186216)
chr8 (222-284)||(6898784-6898846)
chr8 (232-301)||(3207628-3207697)
chr8 (222-327)||(36632636-36632740)
chr8 (232-280)||(32089300-32089348)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 12719930 - 12720012
Alignment:
Q  455 ctctattgggacccatactcttcatctatcttttcagagaattcctttccttcttctgcgatgcaattttcttcattcttcat 537  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12719930 ctctactgggatccatactcttcatctatcttttcagagaattcctttccttcttctgcgatgcaatttccttcattcttcat 12720012  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 12719802 - 12719890
Alignment:
Q  329 ggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaag 417  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  12719802 ggtgccccctaatatggaccctccaataaaaggtccaccaatggatctccttgtgtgacctgctacaaccagtcataatatttaaaaag 12719890  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 20896265 - 20896344
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||||| ||||||||||  |||||| || ||||| |||||||||||   ||||||||||| ||||||||||||||||    
T  20896265 ttaattacagttttggtccctctattttcataattttatgaaattggtcgcactattttaaaattcgataattttggtcc 20896344  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 29366360 - 29366455
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    ||||||||||| |||||| |  ||||||  ||||||||||   |||||||||| ||||||  |||||||| | |||||||||||||||| ||||||    
T  29366360 ttttggtccccctattttcacaattttgcaaaattggtccccatattttaaaattcgataggtttggtcccttcattatatttttgaaccataaaa 29366455  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 3565369 - 3565438
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgata 291  Q
    |||||| || |||||||| || |||||  ||| |||||||||||||||||| ||||||||||| ||||||    
T  3565369 ttaattgcagttttggtctccctatttacatctttttgtgaaattggtcctcctattttaaaattcgata 3565438  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 27569542 - 27569474
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcga 289  Q
    |||||| |||||||||||||||||||||| ||| |||| || ||||| ||| ||| |||||||| ||||    
T  27569542 cttaataacaattttggtccccatattttcatctttttttggaattgatccctctgttttaaaattcga 27569474  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 37327629 - 37327548
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||||| || ||||||||| |   |||| ||||||||| |||||||||||  ||||||||||| | || |||||||||||    
T  37327629 acttaattgcagttttggtcctccacttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtcc 37327548  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 42457376 - 42457440
Alignment:
Q  263 aattggtccttctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    ||||||| |||||||||||||| || | | ||||| ||||| ||| |||||||| ||||||||||    
T  42457376 aattggtacttctattttaaaattcaacagttttgatccatccatcatattttttaactataaaa 42457440  T

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Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 17982442 - 17982530
Alignment:
Q  329 ggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaag 417  Q
    |||||||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||||||||| |||| ||||| ||||||||||||    
T  17982442 ggtgccccctaatatggatcccccaaaaaaaggtccaccaatgaaccttcttgtatgacctgctacaaccagtcatcatatttaaaaag 17982530  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 44362910 - 44363016
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| || ||||||||||| |||||| | ||||||||  |||||||||  || ||||||||||||| | ||||||||| | ||| ||||||||||||    
T  44362910 cttaattgcagttttggtccccctattttcaccattttgtagaattggtccccctgttttaaaactcgacagttttggtccctccatcatatttttgaac 44363009  T
Q  321 tataaaa 327  Q
    |||||||    
T  44363010 tataaaa 44363016  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 44363454 - 44363374
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||| || ||||||||||| |||||| ||||||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  44363454 cttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtcc 44363374  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 332
Target Start/End: Original strand, 6216196 - 6216306
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| |||||||||||||| |||||| | || ||||   |||||||||  ||||||||||| |||||| ||||||||| | ||| ||||||||||||    
T  6216196 cttaattgcaattttggtcccc-tattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtccctccatcatatttttgaac 6216294  T
Q  321 tataaaatggtg 332  Q
    ||||||| ||||    
T  6216295 tataaaaaggtg 6216306  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 1351586 - 1351517
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||||||  |||||| || ||||||||||||||||||| ||||||||||| || | |||||||||||    
T  1351586 ttttggtccctttattttcattattttgtgaaattggtcctcctattttaaaattcaacaattttggtcc 1351517  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 11995979 - 11996075
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatattttt 316  Q
    |||||||| || ||||| |||||  ||||| ||| |||||||||||||||||   |||||||||| ||||||||||| ||||||  || ||||||||    
T  11995979 acttaattgcagttttgatcccctaattttcatctttttgtgaaattggtccccttattttaaaattcgataattttcgtccatttatcatattttt 11996075  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 12499345 - 12499265
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||| || ||||  ||||| ||||||||| |||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  12499345 cttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtcc 12499265  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 327
Target Start/End: Original strand, 12499024 - 12499119
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    ||||| ||||| |||||| | |||||||   |||||||||  ||||||||||| |||| | ||||||||| | ||| |||||||||||||||||||    
T  12499024 ttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatttttgaactataaaa 12499119  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 18879419 - 18879313
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| |||||||||||||| |||||| | |||||||   ||||| |||  ||| ||||||| | || ||||||||||| | ||| ||||||||||||    
T  18879419 cttaattgcaattttggtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctccatcatatttttgaac 18879320  T
Q  321 tataaaa 327  Q
    || ||||    
T  18879319 taaaaaa 18879313  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 51871907 - 51871829
Alignment:
Q  244 tattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaacta 322  Q
    |||||| ||| ||||||||||||||||| | |||||||||| |||||| |||  |||| | |||||||||||| |||||    
T  51871907 tattttcatctttttgtgaaattggtccctttattttaaaattcgatagtttcagtccctccattatattttttaacta 51871829  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 36061068 - 36061121
Alignment:
Q  274 ctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    ||||||||||| |||| | ||||||||| | ||| |||||||||||||||||||    
T  36061068 ctattttaaaattcgacagttttggtccctccatcatatttttgaactataaaa 36061121  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 1351319 - 1351371
Alignment:
Q  275 tattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    |||||||||| |||| ||||||||||| |  || |||||||||||||||||||    
T  1351319 tattttaaaattcgacaattttggtccctctatcatatttttgaactataaaa 1351371  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 2996186 - 2996274
Alignment:
Q  329 ggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaag 417  Q
    |||||||||||||||| | ||||||| |||||||||||||||| |||| ||||| |||||||||| |||| ||||| ||||||||||||    
T  2996186 ggtgccccctaatatggatcccccaaaaaaaggtccaccaatgaaccttcttgtatgacctgctacaaccagtcatcatatttaaaaag 2996274  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 43619436 - 43619503
Alignment:
Q  349 ccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaa 416  Q
    |||||| |||||||||||||||| |||||||| | |||||||||| ||||| |||| ||| |||||||    
T  43619436 ccccaaaaaaaggtccaccaatgaacctccttatatgacctgctacaaccgatcatcataattaaaaa 43619503  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 964170 - 964101
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcga 289  Q
    |||||||||||||||||||||   |||||| ||| ||||| | |||||||||  ||||||||||| ||||    
T  964170 acttaattacaattttggtccttctatttttatctttttgaggaattggtccccctattttaaaattcga 964101  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 32220881 - 32220963
Alignment:
Q  334 cccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaag 417  Q
    ||||||||||| ||||||||| |||||||||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||||    
T  32220881 cccctaatatggaccccccaa-aaaaggtccaccaatgaaccttcttgtatgacctgctacaaccggtcatcatatttaaaaag 32220963  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 4838120 - 4838052
Alignment:
Q  235 tggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccat 303  Q
    |||||||| |||||| ||||||||| |||||||||||  ||||||||||| | || |||||||||||||    
T  4838120 tggtccccttattttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccat 4838052  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 6196709 - 6196778
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||||||| |||||| ||||||||  |||||||||||  ||||||||||| || | |||||||||||    
T  6196709 ttttggtccccttattttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtcc 6196778  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 2236793 - 2236845
Alignment:
Q  275 tattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    |||||||||| || ||||||||| ||| | ||| |||||||||||||||||||    
T  2236793 tattttaaaattcaataattttgatccctccatcatatttttgaactataaaa 2236845  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 16362606 - 16362517
Alignment:
Q  327 atggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaa 416  Q
    |||||||||||||| ||| |||||| || |||||||||||||||| |||||||| | |||||||||| ||| |||||| ||| |||||||    
T  16362606 atggtgccccctaacatggacccccaaaaaaaaggtccaccaatgaacctccttatatgacctgctacaacaggtcatcataattaaaaa 16362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 43071852 - 43071791
Alignment:
Q  240 cccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||    
T  43071852 cccatatttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtcc 43071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 14742282 - 14742203
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||| || ||||||||  | |||||| ||||||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  14742282 ttaattgcagttttggtcttcttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtcc 14742203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 416
Target Start/End: Original strand, 16359696 - 16359782
Alignment:
Q  329 ggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctccttgtgtgacctgctataaccggtcataatatttaaaaa 416  Q
    |||||||||||| ||| ||| || || |||||||||||||||| |||||||| | |||||||||| ||| |||||| ||| |||||||    
T  16359696 ggtgccccctaacatggacctccaaa-aaaaggtccaccaatgaacctccttatatgacctgctacaacaggtcatcataattaaaaa 16359782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 25189728 - 25189622
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| || ||||||||||| |||||| | |||||||   |||||||||  ||||||||||| || | | ||||||||| | ||| |||||||| |||    
T  25189728 cttaattgcagttttggtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctccatcatattttttaac 25189629  T
Q  321 tataaaa 327  Q
    |||||||    
T  25189628 tataaaa 25189622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 38216412 - 38216307
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaact 321  Q
    |||||| || ||||||||||| |||||| | |||||||   |||||||||  ||||||||||| |||| | ||||||||  | ||| ||||||||||||     
T  38216412 ttaattgcagttttggtccccctattttcaccattttgcataattggtccccctattttaaaattcgacacttttggtcattccatcatatttttgaaca 38216313  T
Q  322 ataaaa 327  Q
    ||||||    
T  38216312 ataaaa 38216307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 38216079 - 38216159
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggt-ccttctattttaaaactcgataattttggtc 300  Q
    ||||||| || ||||||| ||| ||||||  |||||||||||||||||| ||  ||||||||||| |||| ||||||||||    
T  38216079 cttaatttcagttttggtacccctattttcttcattttgtgaaattggtcccccctattttaaaattcgacaattttggtc 38216159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 49726722 - 49726654
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtc 300  Q
    ||||| ||||| |||||| ||||||||||||||||  ||| |||||||||| | | |||||||||||||    
T  49726722 ttttgatccccttatttttatcattttgtgaaattaatccctctattttaatatttgataattttggtc 49726654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 39450618 - 39450724
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| || |||| |||||| |||||| | |||||||   |||||||||  ||||||||||| | || | ||||| ||| | ||| ||||||||||||    
T  39450618 cttaattgcagtttttgtccccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatcatatttttgaac 39450717  T
Q  321 tataaaa 327  Q
    |||||||    
T  39450718 tataaaa 39450724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 38018539 - 38018458
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||||| || ||||||||||| ||||||  ||||||| |  ||||||||  |||||||||||| | || |||||||||||    
T  38018539 acttaattgcagttttggtccccctattttcttcattttatagaattggtctctctattttaaaatttgacaattttggtcc 38018458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 38018300 - 38018352
Alignment:
Q  275 tattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    |||||||||| |||| ||| ||||||| | ||| |||||||||||||||||||    
T  38018300 tattttaaaattcgacaatcttggtccctccatcatatttttgaactataaaa 38018352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 43344797 - 43344903
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| ||||||||||| ||||||||| || ||||||   |||||||||  ||||||||||| |||| |  |||||||| | ||| |||||||| |||    
T  43344797 cttaattgcaattttggtctccatattttcattattttgcagaattggtccccctattttaaaattcgacaggtttggtcccttcatcatatttttaaac 43344896  T
Q  321 tataaaa 327  Q
    |||||||    
T  43344897 tataaaa 43344903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 44166457 - 44166562
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaact 321  Q
    |||||| ||||||| |||| | |||||| || ||||| |  |||  ||||| ||||||||||| | || | ||||||||||| |||||||||||||||||    
T  44166457 ttaattgcaattttagtcctcctatttttattattttatagaataagtcctcctattttaaaatttgacagttttggtccatccattatatttttgaact 44166556  T
Q  322 ataaaa 327  Q
    ||||||    
T  44166557 ataaaa 44166562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 15061447 - 15061542
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttt 315  Q
    |||||||| || ||||| || ||||||||| ||||||||||  ||||| |||| ||||||||||| | || | ||||||||||| ||| |||||||    
T  15061447 acttaattgcagttttgatctccatattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggtccattcatcatatttt 15061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 34080060 - 34080111
Alignment:
Q  329 ggtgccccctaatatgaaccccccaataaaaggtccaccaatggacctcctt 380  Q
    ||||| |||||||||| ||||||||| |||||||||||||||| ||||||||    
T  34080060 ggtgctccctaatatggaccccccaaaaaaaggtccaccaatgaacctcctt 34080111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 38276085 - 38276007
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||| || ||||||||||| |||||  ||||||||| ||||||||||||  |||||||||| || | |||||||||||    
T  38276085 cttaattgcagttttggtccccctatttatatcattttgcgaaattggtcct--tattttaaaattcaacaattttggtcc 38276007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 38275767 - 38275861
Alignment:
Q  233 tttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    |||||||||| |||||| | |||||||   | ||||| |  ||||||||||| |||||  ||||||||| | ||| |||||||||||||||||||    
T  38275767 tttggtccccctattttcaccattttgccgagttggtacccctattttaaaattcgatggttttggtccctccatcatatttttgaactataaaa 38275861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 7191861 - 7191941
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||||| ||| |||||||||| ||||||||||||||||  |||| |||||   |||||||||| |||| | |||||||||    
T  7191861 acttaattgcaagtttggtcccc-tattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtcc 7191941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 9388803 - 9388872
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||| |||| |||||| ||| |||||| ||||||||||  ||||||||||| |||| |||||| ||||    
T  9388803 ttttggcccccctatttttatctttttgtaaaattggtccccctattttaaaattcgacaattttagtcc 9388872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 43670695 - 43670799
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaac 320  Q
    ||||||| || ||||||||||| |||||| |   |||||  ||||||||||| ||||||||||| ||||   | ||||||| | ||| |||| |||||||    
T  43670695 cttaattgcagttttggtccccctattttcactcttttgcaaaattggtcctcctattttaaaattcgactgtcttggtccctccatcatatatttgaac 43670794  T
Q  321 tataa 325  Q
    |||||    
T  43670795 tataa 43670799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 11488848 - 11488925
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttg 297  Q
    |||||||||||||||||||||   |||||| ||| ||||| | |||||||||  |||||||||||||||| |||||||    
T  11488848 acttaattacaattttggtccttctatttttatctttttgaggaattggtccccctattttaaaactcgacaattttg 11488925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 13639695 - 13639616
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||||| ||||||||||  |||||| |||||||||  ||||||||||  ||||||||||| || | |||||||||||    
T  13639695 ttaattacagttttggtccctttattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtcc 13639616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 5548110 - 5548167
Alignment:
Q  244 tattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    |||||| || ||||||| |||||||||| |||||||||||| |||| |||||||||||    
T  5548110 tatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtcc 5548167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 36201735 - 36201796
Alignment:
Q  220 acttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctatttta 281  Q
    |||||||||||||||||||||   |||||| ||| ||||| | ||||||||| |||||||||    
T  36201735 acttaattacaattttggtccttctatttttatctttttgaggaattggtccctctatttta 36201796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 21132 - 21212
Alignment:
Q  221 cttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||| || ||||  ||||| ||||||||| |||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  21132 cttaattgcagtttttatccccttattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtcc 21212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 21453 - 21358
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaactataaaa 327  Q
    ||||| ||||| |||||| | |||||||   |||||||||  ||||||||||| |||| | ||||||||| | ||| |||||||||||||||||||    
T  21453 ttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatttttgaactataaaa 21358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 20771745 - 20771693
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaa 284  Q
    ||||||||||| |||||| |||||||||  |||||||||| ||||||||||||    
T  20771745 ttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaa 20771693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 20781539 - 20781487
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaa 284  Q
    ||||||||||| |||||| |||||||||  |||||||||| ||||||||||||    
T  20781539 ttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaa 20781487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 39186152 - 39186216
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaact 286  Q
    ||||||||| ||||||||| | |||||| |||||||||  ||||||||||  |||||||||||||    
T  39186152 ttaattacagttttggtcctcctattttcatcattttgcaaaattggtccccctattttaaaact 39186216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 6898846 - 6898784
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaa 284  Q
    ||||||| ||||||||||||| |||||| | ||||||||||| ||| || | |||||||||||    
T  6898846 ttaattataattttggtccccctattttcaccattttgtgaatttgatcttcctattttaaaa 6898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 3207628 - 3207697
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtcc 301  Q
    ||||||||| |||||||| ||||||||   |||||||||  |||||||||||| |||| |||||| ||||    
T  3207628 ttttggtcctcatattttcatcattttacaaaattggtctctctattttaaaattcgacaattttagtcc 3207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 36632636 - 36632740
Alignment:
Q  222 ttaattacaattttggtccccatattttaatcattttgtgaaattggtccttctattttaaaactcgataattttggtccatacattatatttttgaact 321  Q
    ||||||||| ||||| |||| ||||||| |  ||||||   ||||||| | |||||||||||| |||| ||||||  ||| | ||| |||||||||||||    
T  36632636 ttaattacagttttgatccc-atatttttacgattttgcataattggttcctctattttaaaattcgacaattttactccctccatcatatttttgaact 36632734  T
Q  322 ataaaa 327  Q
    ||||||    
T  36632735 ataaaa 36632740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 32089348 - 32089300
Alignment:
Q  232 ttttggtccccatattttaatcattttgtgaaattggtccttctatttt 280  Q
    ||||||||||| |||||| ||| |||||||||||||||||  |||||||    
T  32089348 ttttggtccccctattttcatctttttgtgaaattggtccccctatttt 32089300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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