View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4116_high_2 (Length: 380)

Name: NF4116_high_2
Description: NF4116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4116_high_2
NF4116_high_2
[»] chr4 (8 HSPs)
chr4 (17-374)||(5174668-5175021)
chr4 (154-374)||(5197409-5197629)
chr4 (17-374)||(4840501-4840854)
chr4 (154-374)||(5215554-5215774)
chr4 (91-374)||(4855078-4855360)
chr4 (155-374)||(5184010-5184229)
chr4 (154-374)||(5161727-5161949)
chr4 (17-97)||(5184282-5184362)
[»] chr2 (3 HSPs)
chr2 (12-127)||(36248934-36249047)
chr2 (12-127)||(19626634-19626747)
chr2 (12-127)||(19823535-19823648)
[»] chr7 (1 HSPs)
chr7 (20-127)||(4826657-4826762)
[»] chr6 (1 HSPs)
chr6 (12-127)||(16550093-16550206)
[»] chr1 (1 HSPs)
chr1 (18-127)||(23084053-23084160)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 5175021 - 5174668
Alignment:
Q  17 taatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaatgtctc 116  Q
    ||||||||||||||  || ||||||||| |||||||  | || |||||||||||| | ||| ||||||||||||||||||| ||||||||  ||| ||||    
T  5175021 taatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatcataaagttgacaaaaggaactgaacattcaatttctc 5174922  T
Q  117 aacattaaac-tgtcgaaa-tcaaagctaaagnnnnnnnttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattctt 214  Q
    ||   | ||| | |||||| | ||||||||||       |||||||||||||||||||||||||||| ||||||||| |||      |||||| | ||||    
T  5174921 aagtctcaacatctcgaaaattaaagctaaaggtaaaaattacaatatccaaatatttgagactccacataaagtttaaac------tatggacactctt 5174828  T
Q  215 caatacaatggaaaagttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5174827 caatacaatggaaaagttggaaaaaatctacgcataaacttactgatataataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatga 5174728  T
Q  315 aggccagcaatattgttatgtaagatgctgtgaaactccaataaaatgttatcatgtcca 374  Q
     ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5174727 gggccaacaatattgttatgtaagatgctgtgaaactccaataaaaagttatcatgtcca 5174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 5197629 - 5197409
Alignment:
Q  154 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 253  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||| |||||||  | ||||||||||||||||||||||||||| |||||||||||||||    
T  5197629 ttacaatatgcaaatatttgagactccacataatgtttcaacaggaactatggccactcttcaatacaatggaaaagttggaaagaatctacgcataaac 5197530  T
Q  254 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgaaggccagcaatattgttatgtaagatgctgtgaaactcc 353  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||||||||||||||    
T  5197529 ttactgatgtaataaaaccaggccatgcgccaacgtggattgatgcacaacactgttatgaaggccaatagtattgttatgtaagatgctgtgaaactcc 5197430  T
Q  354 aataaaatgttatcatgtcca 374  Q
    |||||||||||||||||||||    
T  5197429 aataaaatgttatcatgtcca 5197409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 4840501 - 4840854
Alignment:
Q  17 taatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaatgtctc 116  Q
    ||||||||||||||  || ||||||||| |||||||  | || | |||||||| | | ||| |||||| ||||||| |||| ||||||||  ||||||||    
T  4840501 taatatataacaatgcctccaaaccactccagataaatacatcagacaaacaatacgatgatcataaaattgacaataggaactgaacattcaatgtctc 4840600  T
Q  117 aacattaaac-tgtcgaaa-tcaaagctaaagnnnnnnnttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattctt 214  Q
    ||   | ||| | |||||| | ||||||||||       ||||||||||||||||||| |||||||| ||||||||| |||      |||||| | ||||    
T  4840601 aagtctcaacatctcgaaaattaaagctaaagataaaaattacaatatccaaatattttagactccacataaagtttaaac------tatggacactctt 4840694  T
Q  215 caatacaatggaaaagttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatga 314  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4840695 taatacaatggaaaagttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaacactgttatga 4840794  T
Q  315 aggccagcaatattgttatgtaagatgctgtgaaactccaataaaatgttatcatgtcca 374  Q
    |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4840795 aggctaacaatattgttatgtaagatgctgtgaaactccaataaaaagttatcatgtcca 4840854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 5215774 - 5215554
Alignment:
Q  154 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 253  Q
    ||||||||||||||||||||||||| ||  | ||||||||||||| |  |  || | |||||||||||||||||| |||||||||| | |||||||||||    
T  5215774 ttacaatatccaaatatttgagacttcacttgaagtttcaacaggaataacagacactcttcaatacaatggaaacgttggaaaaattttacgcataaac 5215675  T
Q  254 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgaaggccagcaatattgttatgtaagatgctgtgaaactcc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||  | |||||||||||||||||||||||||||||    
T  5215674 ttactgatgtaataaaaccaggccatacgccaacgtggattgacgcacaacactgttatgaaggccaatagtattgttatgtaagatgctgtgaaactcc 5215575  T
Q  354 aataaaatgttatcatgtcca 374  Q
    |||||||||||||||||||||    
T  5215574 aataaaatgttatcatgtcca 5215554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 91 - 374
Target Start/End: Original strand, 4855078 - 4855360
Alignment:
Q  91 aaaaggacctgaacatcaaatgtctcaacattaaactgtc-gaaatcaaagctaaagnnnnnnnttacaatatccaaatatttgagactccaaataaagt 189  Q
    ||||||| || || ||||||||||||| ||| |||||||| ||||| |||| ||||        |||||||| ||||||||||||||||||| |||||||    
T  4855078 aaaaggagcttaaaatcaaatgtctcagcatcaaactgtctgaaattaaagttaaatataaaaattacaatacccaaatatttgagactccacataaagt 4855177  T
Q  190 ttcaacaggtactatggatattcttcaatacaatggaaaagttggaaaaaatctacgcataaacttactgatgtaataaaaccaggccatacgccaacgt 289  Q
    |||||||||||||| ||| | |||| |||||||||||||||||||||||||  |||  | ||||||||| ||||||||||||||||||| ||||||||||    
T  4855178 ttcaacaggtactacggacactctttaatacaatggaaaagttggaaaaaagatacctacaaacttactaatgtaataaaaccaggccaaacgccaacgt 4855277  T
Q  290 ggattgatgcacaaaactgttatgaaggccagcaatattgttatgtaagatgctgtgaaactccaataaaatgttatcatgtcca 374  Q
    |||||||||  ||| ||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4855278 ggattgatg--caacactgttatgaaggtcagtagtattgttatgtaagatggtgtgaaactccaataaaatgttatcatgtcca 4855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 155 - 374
Target Start/End: Complemental strand, 5184229 - 5184010
Alignment:
Q  155 tacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattcttcaatacaatggaaaagttggaaaaaatctacgcataaact 254  Q
    |||| ||||||||||||| |||||||| |||||||||||||||| |||||||| | || |||||| |||||||||| |||||| ||||||||||||||||    
T  5184229 tacagtatccaaatattttagactccacataaagtttcaacaggaactatggacactcatcaatataatggaaaagatggaaagaatctacgcataaact 5184130  T
Q  255 tactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgaaggccagcaatattgttatgtaagatgctgtgaaactcca 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||  | |||||| || ||||||| | ||||||||||    
T  5184129 tactgatgtaataaaaccaggccatacgccaacgtggattgatgcccaacacagttatgaaggccaatagtattgtaatataagatgttatgaaactcca 5184030  T
Q  355 ataaaatgttatcatgtcca 374  Q
    ||||||||||||||||||||    
T  5184029 ataaaatgttatcatgtcca 5184010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 5161949 - 5161727
Alignment:
Q  154 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggatattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 253  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| | | | |||||| |||||||||||||||||||||||    ||   ||||    
T  5161949 ttacaatatccaaatatttgagactccacgtaaagtttcaacaggtactacgtacactcttcagtacaatggaaaagttggaaaaaaaaatcgtgcaaac 5161850  T
Q  254 ttactgatgtaataaaaccaggccatacgccaacgtggattgatgcacaaaactgttatgaaggccagcaatattgttatgtaagatgctgt-gaaa-ct 351  Q
    ||||| |||||||||||||| |||||||||||||| | |||||| ||||| ||||||| |||||||| |||||||||||||||||||||||| |||| ||    
T  5161849 ttactaatgtaataaaaccaagccatacgccaacgagcattgatacacaacactgttacgaaggccaacaatattgttatgtaagatgctgtagaaacct 5161750  T
Q  352 ccaataaaatgttatcatgtcca 374  Q
    |||||||||||||||||||||||    
T  5161749 ccaataaaatgttatcatgtcca 5161727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 5184362 - 5184282
Alignment:
Q  17 taatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaagga 97  Q
    |||||||| |||||| |||||||   || |||||||| | || |||||||||||| | |||||||||||||||||| ||||    
T  5184362 taatatatcacaatatcttcaaagttctccagataagtacatcacacaaacaacatgatgaacataaagttgacaagagga 5184282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 36249047 - 36248934
Alignment:
Q  12 tatactaatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaat 111  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| || ||| |||||||||| || ||||||  | ||||||| || ||||||||||| |    
T  36249047 tataataatatataacaatagcttcaaaccactctagataagaatatgacaaaaacaacaggatgcacataa--tggacaaaatgatctgaacatcaatt 36248950  T
Q  112 gtctcaacattaaact 127  Q
     ||||||||| |||||    
T  36248949 atctcaacatcaaact 36248934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 19626747 - 19626634
Alignment:
Q  12 tatactaatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaat 111  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| || ||| || ||||||| || ||||||  | |||||||  | ||||||||||| |    
T  19626747 tataataatatataacaatagcttcaaaccactctagataagaatatgacaaaaccaacaggatgcacataa--tggacaaaataaactgaacatcaatt 19626650  T
Q  112 gtctcaacattaaact 127  Q
     ||||||||| |||||    
T  19626649 atctcaacatcaaact 19626634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 19823648 - 19823535
Alignment:
Q  12 tatactaatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaat 111  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| || ||| || ||||||| || ||||||  | |||||||  | ||||||||||| |    
T  19823648 tataataatatataacaatagcttcaaaccactctagataagaatatgacaaaaccaacaggatgcacataa--tggacaaaataaactgaacatcaatt 19823551  T
Q  112 gtctcaacattaaact 127  Q
     ||||||||| |||||    
T  19823550 atctcaacatcaaact 19823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 4826762 - 4826657
Alignment:
Q  20 tatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaatgtctcaac 119  Q
    ||||||||||||||||||||||||| ||||||| || || ||| |||||||||| || ||||||  | ||||||| || ||||||||||| | |||||||    
T  4826762 tatataacaatagcttcaaaccactccagataaaaatatgacaaaaacaacaggatgcacataa--tggacaaaatgaactgaacatcaattatctcaac 4826665  T
Q  120 attaaact 127  Q
    || |||||    
T  4826664 atcaaact 4826657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 16550093 - 16550206
Alignment:
Q  12 tatactaatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaat 111  Q
    |||| |||||||||||||||||||||||||||| || ||||||| || ||| |||||||||| || ||||||  | ||||||| || ||||||||||| |    
T  16550093 tataataatatataacaatagcttcaaaccactccaaataagaatatgacaaaaacaacaggatgcacataa--tggacaaaatgatctgaacatcaatt 16550190  T
Q  112 gtctcaacattaaact 127  Q
      |||||||| |||||    
T  16550191 acctcaacatcaaact 16550206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 23084053 - 23084160
Alignment:
Q  18 aatatataacaatagcttcaaaccacttcagataagaaaattacacaaacaacaggctgaacataaagttgacaaaaggacctgaacatcaaatgtctca 117  Q
    ||||||||||||||||| ||||||||| |||||||| | || | | |||||||||| || ||||||||  |||||||  | ||||||||||||| |||||    
T  23084053 aatatataacaatagctgcaaaccactccagataagtatatgaaaaaaacaacaggatgcacataaag--gacaaaattaactgaacatcaaatatctca 23084150  T
Q  118 acattaaact 127  Q
    |||| |||||    
T  23084151 acatcaaact 23084160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University