View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4116_low_1 (Length: 454)
Name: NF4116_low_1
Description: NF4116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4116_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 224 - 432
Target Start/End: Complemental strand, 5012599 - 5012388
Alignment:
| Q |
224 |
gtcccttaatccagcaaatctatcgtcaaggaaactagatgcaagaaacttttacaaaaagtaggtactaacatatagttaaagggaggcaaaccttttg |
323 |
Q |
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| T |
5012599 |
gtcccttaatccagcaaatctatcgtcaaggaaactagatgcaagaaacttttacaaaaagtaggtactaacatatagttaaagggaggcaaaccttttg |
5012500 |
T |
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| Q |
324 |
aaaactgaaataggttattagacattacttagtgcacccctcaatcttttgttacaaaaatatcatctcaggtagaaaaaccagtatcatcat---catc |
420 |
Q |
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| T |
5012499 |
aaaactgaaatagttgattagacattacttagtgcacccctcaatcttttgttacaaaaatatcatctcaggtagaaaaaccagtatcatcatcatcatc |
5012400 |
T |
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| Q |
421 |
taccatttcatc |
432 |
Q |
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|||||||||||| |
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| T |
5012399 |
taccatttcatc |
5012388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 5012829 - 5012623
Alignment:
| Q |
17 |
aattgttgataaatgcagccttaatcatgatcacaaacataatagtttgtttatattgtgacccaaatggccttttnnnnnnngacctggaagcataatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5012829 |
aattgttgataaatgcagccttaatcatgatcacaaacataatagtttgtttatattgtgacccaaatggccttttaaaa---gacctggaagcataatt |
5012733 |
T |
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| Q |
117 |
gagtaattcaaaccataacatgcatataataaaatcccttgattgatatggcaaaatgttaacataaatttaccaaaattctggacttttcaactagcta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5012732 |
gagtaattcaaaccataacatgcatataataaaatcccttgattgatatggcaaaatgttaacataaatttaccaaaattctggacttttcaactagcta |
5012633 |
T |
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| Q |
217 |
gaagattgtc |
226 |
Q |
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|||||||||| |
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| T |
5012632 |
gaagattgtc |
5012623 |
T |
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