View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4116_low_3 (Length: 335)
Name: NF4116_low_3
Description: NF4116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4116_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 2592431 - 2592726
Alignment:
| Q |
30 |
gattgctgattggaaagatttgagtgaaaatatactgtatatgtatatgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagaggaaa |
129 |
Q |
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| T |
2592431 |
gattgctgattggaaagatttgagtgaaaatataatgtatatgtatatgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagaggaaa |
2592530 |
T |
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| Q |
130 |
a-agaaagagaaaaataaataaaggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttg |
228 |
Q |
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| T |
2592531 |
aaagaaagagaaaaataaataaaggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttg |
2592630 |
T |
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| Q |
229 |
gtatttgactgtacaaagtggtggttttttcttgaatgat-aataatggg-ttaccttttcaacatttgtgtctcttttatacaagaaccacaggt |
322 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2592631 |
gtatttgactgtacaaagtgctggttttttcttgaatgataaataatgggtttgccttttcaacatttgtgtctcttttatacaacaaccacaggt |
2592726 |
T |
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