View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_high_15 (Length: 202)
Name: NF4117_high_15
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 39815621 - 39815454
Alignment:
| Q |
17 |
agacaacttgcattgtagatcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtatt |
116 |
Q |
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| T |
39815621 |
agacaacatgcattgtagatcaaaatgagcacataatgtgaacctctagattcagcaactcttaaaagttgaagcatctatcattcagttcatttgtatt |
39815522 |
T |
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| Q |
117 |
ttcctataaatatataagactcacattgtaatagaaattctatgagaaaagaataatataaataatgt |
184 |
Q |
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| T |
39815521 |
ttcctataaatatataagactcacattgtaatagaaattctatgagaaaagaataatataaataatgt |
39815454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 39806277 - 39806159
Alignment:
| Q |
35 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
134 |
Q |
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| T |
39806277 |
atcaaaatgaacacataatatgagcctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttatattttcctatca----ataaa |
39806182 |
T |
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| Q |
135 |
actcacattgtaatagaaattct |
157 |
Q |
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| T |
39806181 |
aatcacattgtaatagaaattct |
39806159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 39922803 - 39922663
Alignment:
| Q |
35 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
134 |
Q |
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| T |
39922803 |
atcagaatgaactcataatatgagcctctagatacaagaactcttaaa-gttgaaggatctatcatacatttcatttgtattttcctataaata----ag |
39922709 |
T |
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| Q |
135 |
actcacattgtaatagaaattctatgagaaaagaataatataaata |
180 |
Q |
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| T |
39922708 |
actcacattgtaatagaaattctatgagaagagaatattataaata |
39922663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 39911705 - 39911565
Alignment:
| Q |
35 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaatatataag |
134 |
Q |
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|||||||| | ||||||||| | |||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| |||||||| ||||| |
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| T |
39911705 |
atcaaaatcaacacataatgatagcctctagattcaacaactcttaca-gttgaagcatctatcatacatttcatttgtattctcctataa----ataag |
39911611 |
T |
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| Q |
135 |
actcacattgtaatagaaattctatgagaaaagaataatataaata |
180 |
Q |
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| T |
39911610 |
actcccattataatagaaattttatgagaggagaataatataaata |
39911565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 39903176 - 39903084
Alignment:
| Q |
35 |
atcaaaatgagcacataatgtgaacctctagattcaacaactcttaaaagttgaagcatctatcattcagttcatttgtattttcctataaata |
128 |
Q |
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|||||||||| |||||||||||| ||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
39903176 |
atcaaaatgaacacataatgtgagcctcttgattcaacaactctt-acagttgaagcatctatcatacagttcatttgtaaattccaataaata |
39903084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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