View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_high_2 (Length: 407)
Name: NF4117_high_2
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 6507025 - 6507414
Alignment:
| Q |
18 |
tgcagatgatcgttgtcctcagaagagtgagtatcccattcccatgtcgacatcgccggaaggagagtatgaatgagaagaataggtagttgaagagaca |
117 |
Q |
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| T |
6507025 |
tgcagatgatcgttgtcctcagaagagtgagtatcccattcccatgtcgacatcgccgaaaggagagtatgaatgagaagaataggtagttgaagagaca |
6507124 |
T |
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| Q |
118 |
tcttgagttgtcattagtccatagcttggaatttcactccttggtggttggttaaaaatagctgaaagttcattgtaattgcaatcccataatccttcac |
217 |
Q |
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| T |
6507125 |
tcttgagttgtcattagtccatagcttggaatttcactccttggtggttggttaaaaatagctgaaagttcattgtaattgcaatcccataatccttcac |
6507224 |
T |
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| Q |
218 |
tataatcacttgtgttaatgttatatgcttcttgagagaatggagtgtagtcaaaaaatgattgaccatgcatgaagtttgttgtgctaatggaatcaac |
317 |
Q |
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| T |
6507225 |
tataattacttgtgttaatgttatatgcttcttgagagaatggagtgtagtcaaaaaatgattgaccatgcatgaagtttgttgtgcaaatggaatcaac |
6507324 |
T |
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| Q |
318 |
aacattttggtgttcacttgaatcacttgcattactcctatgatcatcaaagtttgaattgtttgtgttggaaataggtttgaagcaatt |
407 |
Q |
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| T |
6507325 |
aacattttggtgttcacttgaatcacttgcattactactatgatcatcaaagtttgaattgttggtgttggaaataggtttgaagcaatt |
6507414 |
T |
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