View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_10 (Length: 323)
Name: NF4117_low_10
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 29281677 - 29281370
Alignment:
| Q |
1 |
tgaaaagatggacatgcccaaattcaggattgatggttcatccttttattggatccctttgtaatattttattactaatttccttttcttttttcatgga |
100 |
Q |
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| T |
29281677 |
tgaaaagatggacatgcccaaattcaggattgatggttcatccttttattggatccctttgtaatattttattactaatttccttttcttttttcatgga |
29281578 |
T |
|
| Q |
101 |
agttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaatcatttagaaagtaactgtctatttcttccccttttatctctacatgtcc |
200 |
Q |
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| T |
29281577 |
agttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaatcatttagaaagtaactgtctatttcttccccttttatctctacatgtcc |
29281478 |
T |
|
| Q |
201 |
ttttctcaataagaagtaaaattattataacaatcatattgaaatcaagaagaaacaaagtatacctctcatttggagtatctttctcttgagttgctca |
300 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281477 |
ttttctcaataagaagtaaaattattacaacaattatattgaaatcaagaagaaacaaagtatacctctcatttggagtatctttctcttgagttgctca |
29281378 |
T |
|
| Q |
301 |
gcacaagc |
308 |
Q |
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|||||||| |
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| T |
29281377 |
gcacaagc |
29281370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 6471307 - 6471362
Alignment:
| Q |
253 |
aaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagc |
308 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6471307 |
aaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagc |
6471362 |
T |
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