View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4117_low_12 (Length: 253)

Name: NF4117_low_12
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4117_low_12
NF4117_low_12
[»] chr2 (6 HSPs)
chr2 (77-167)||(19138273-19138360)
chr2 (168-238)||(17164592-17164662)
chr2 (168-238)||(36250585-36250655)
chr2 (168-220)||(19877507-19877559)
chr2 (168-238)||(32212942-32213012)
chr2 (168-220)||(24168226-24168278)
[»] chr5 (2 HSPs)
chr5 (168-238)||(17042198-17042268)
chr5 (169-220)||(7933407-7933458)
[»] chr3 (8 HSPs)
chr3 (168-238)||(24700097-24700167)
chr3 (168-238)||(8485965-8486035)
chr3 (170-238)||(27237972-27238040)
chr3 (185-238)||(54737170-54737223)
chr3 (168-219)||(32834615-32834666)
chr3 (168-212)||(25574666-25574710)
chr3 (168-220)||(47425172-47425224)
chr3 (168-245)||(46225068-46225145)
[»] chr8 (2 HSPs)
chr8 (167-220)||(19177952-19178005)
chr8 (168-234)||(28239295-28239361)
[»] scaffold0234 (1 HSPs)
scaffold0234 (168-238)||(6953-7023)
[»] chr4 (6 HSPs)
chr4 (168-238)||(5155502-5155572)
chr4 (168-235)||(17722293-17722360)
chr4 (168-238)||(51746206-51746276)
chr4 (168-238)||(2594448-2594518)
chr4 (168-220)||(17641348-17641400)
chr4 (168-236)||(1979391-1979459)
[»] chr6 (4 HSPs)
chr6 (175-238)||(16548292-16548355)
chr6 (168-220)||(21224552-21224604)
chr6 (169-238)||(16730444-16730513)
chr6 (168-236)||(27966300-27966368)
[»] chr7 (3 HSPs)
chr7 (168-220)||(8981547-8981599)
chr7 (166-220)||(7705932-7705986)
chr7 (168-238)||(31715315-31715385)
[»] chr1 (1 HSPs)
chr1 (168-220)||(21112740-21112792)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 19138273 - 19138360
Alignment:
Q  77 tactccatatggaaataagttcccgatacatcatcattccttagcagattgaggattctgaatgttacccatgaattagcaaactagaatc 167  Q
    ||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  19138273 tactccatatggaaataagttcccgatacatcat---tcctcagcagattgaggattctgaagattacccatgaattagcaaactagaatc 19138360  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 17164592 - 17164662
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17164592 cactactacataaatgacatttcacatcggttgaaatcgacatttcacatcgggtggcaaccgatgtaact 17164662  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 36250655 - 36250585
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  36250655 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaact 36250585  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 19877559 - 19877507
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  19877559 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgg 19877507  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 32212942 - 32213012
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||    
T  32212942 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaact 32213012  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 24168278 - 24168226
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| | ||||||||||||||||||| || |||||| || |||||||||||    
T  24168278 cactactatagaaatgacatttcacatcagtggaaatcaacttttcacatcgg 24168226  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 17042198 - 17042268
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  17042198 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgggtgccaaccgatgtaact 17042268  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 7933407 - 7933458
Alignment:
Q  169 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  7933407 actactacagaaatgacatttcacatcggttggaatcgatatttcacatcgg 7933458  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 24700097 - 24700167
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  24700097 cactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcggtttccaaccgatgtaact 24700167  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 8485965 - 8486035
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  8485965 cactactacaaaaatgacatttcacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaact 8486035  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 27238040 - 27237972
Alignment:
Q  170 ctacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||| ||||||||||||| | |||||||||||||||||| ||| ||||| | |||||||||||||||||    
T  27238040 ctactacagaaatgacatcttacatcggttgaaatcgacttttaacatcaggtggcaaccgatgtaact 27237972  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 54737170 - 54737223
Alignment:
Q  185 catttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    ||||| |||||||||||||||||||||||||||||| |  ||||||||||||||    
T  54737170 cattttacatcggttgaaatcgacatttcacatcgggtaccaaccgatgtaact 54737223  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 32834615 - 32834666
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcg 219  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||||||||    
T  32834615 cactactacagaaatgacatttcacatcggtcaaaatcgacttttcacatcg 32834666  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 25574710 - 25574666
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacattt 212  Q
    |||||| ||||||||||||||||||||| || |||||||||||||    
T  25574710 cactactacagaaatgacatttcacatcagtggaaatcgacattt 25574666  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 47425224 - 47425172
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| ||||||||||||||||||||| || |||||| || |||||||||||    
T  47425224 cactactacagaaatgacatttcacatcagtggaaatcaacttttcacatcgg 47425172  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 46225068 - 46225145
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaactgatgatg 245  Q
    |||||| ||| ||||||||||||| |||| | ||||| ||||||||||||||| |  || | ||||| ||||||||||    
T  46225068 cactactacataaatgacatttcatatcgatggaaattgacatttcacatcggatcccagcagatgtgactgatgatg 46225145  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 19177952 - 19178005
Alignment:
Q  167 ccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19177952 ccactactacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 19178005  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 28239295 - 28239361
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgt 234  Q
    |||||| ||| ||||||||||||||||| || ||||| ||||||||||||||| |  ||||||||||    
T  28239295 cactactacataaatgacatttcacatcagtggaaattgacatttcacatcgggtcccaaccgatgt 28239361  T

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Target: scaffold0234 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 7023 - 6953
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |  ||||||||||||||    
T  7023 cactactacagaaatgacatttcacatcgattgaaattgacatttcacatcgggtaccaaccgatgtaact 6953  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 5155502 - 5155572
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||||||||||    
T  5155502 cactactacagaaatgacatttcacatcagtggaaatcgacatttcacatcgggtcccaaccgatgtaact 5155572  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 17722293 - 17722360
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgta 235  Q
    |||||| ||||||||||||||||||||||||||||||| || ||| ||||||| || |||||||||||    
T  17722293 cactactacagaaatgacatttcacatcggttgaaatcaacttttaacatcgggtgccaaccgatgta 17722360  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 51746276 - 51746206
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| |||||||||||||||||||||||| |||| |||| ||||||||||| |  | ||||||||||||    
T  51746276 cactactacagaaatgacatttcacatcggtggaaaacgacttttcacatcgggtccctaccgatgtaact 51746206  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 2594448 - 2594518
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||||||||||||||||||||| || ||| ||||| ||| ||||||| |  ||||||||||||||    
T  2594448 cactactacagaaatgacatttcacatcagtggaattcgactttttacatcgggtcccaaccgatgtaact 2594518  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 17641348 - 17641400
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| ||| ||||||||| |||||||||||| ||| |||||||||||||||    
T  17641348 cactactacataaatgacatctcacatcggttggaattgacatttcacatcgg 17641400  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 1979391 - 1979459
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 236  Q
    ||||||| |||||||||  ||||||||| |||||||  ||  ||||||||||| || ||||||||||||    
T  1979391 cactacagcagaaatgatttttcacatcagttgaaaatgatttttcacatcggttgacaaccgatgtaa 1979459  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 16548292 - 16548355
Alignment:
Q  175 acagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||    
T  16548292 acagaaatgacatttcacattagttgaaatcgacatttcacatcgggtaccaaccgatgtaact 16548355  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21224552 - 21224604
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| ||||||||||||||| ||||| || ||||||||| |||||||||||    
T  21224552 cactactacagaaatgacatttaacatcagtggaaatcgacttttcacatcgg 21224604  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 16730513 - 16730444
Alignment:
Q  169 actacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    ||||| ||||||||||||||| ||||| || ||||||||| |||||||| || |  || |||||||||||    
T  16730513 actactacagaaatgacatttaacatcagtggaaatcgacttttcacattgggtcccagccgatgtaact 16730444  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 27966368 - 27966300
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaa 236  Q
    |||||| |||||||| |  ||||||||| ||||||| | || ||||||||| | |||||||||||||||    
T  27966368 cactactacagaaataagttttcacatcagttgaaaactacttttcacatcaggtggcaaccgatgtaa 27966300  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8981547 - 8981599
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| |||||||||||||| ||||||||||| ||||||| |||||||||||    
T  8981547 cactactacagaaatgacattccacatcggttggaatcgacttttcacatcgg 8981599  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 7705932 - 7705986
Alignment:
Q  166 tccactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||||| |||||||| |||||||||||| || ||||| |||||||||||||||    
T  7705932 tccactactacagaaatcacatttcacatcagtggaaattgacatttcacatcgg 7705986  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 31715385 - 31715315
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcggctggcaaccgatgtaact 238  Q
    |||||| ||| ||||||||||||||||| ||  || ||||| ||||||||||| |  ||||||||||||||    
T  31715385 cactactacaaaaatgacatttcacatcagtgaaattcgacttttcacatcggatcccaaccgatgtaact 31715315  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21112740 - 21112792
Alignment:
Q  168 cactacaacagaaatgacatttcacatcggttgaaatcgacatttcacatcgg 220  Q
    |||||| ||||||||||||||| ||||| || |||||| || |||||||||||    
T  21112740 cactactacagaaatgacatttaacatcagtggaaatcaacttttcacatcgg 21112792  T

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