View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_16 (Length: 245)
Name: NF4117_low_16
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 7346686 - 7346473
Alignment:
| Q |
22 |
attcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaatgagattgttgcnnnnnnn |
121 |
Q |
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| T |
7346686 |
attcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaatgagattgttgcttttttt |
7346587 |
T |
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| Q |
122 |
atgcgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcgaattttttaacgtcacttatctaata |
221 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346586 |
atgcaacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggcgaattttttaacgtcacttatctaata |
7346487 |
T |
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| Q |
222 |
ccttcacatctctg |
235 |
Q |
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|||||||||||||| |
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| T |
7346486 |
ccttcacatctctg |
7346473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 53400925 - 53401037
Alignment:
| Q |
123 |
tgcgacggcagagtcgacgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcgaattttttaacgtcacttatctaatac |
222 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53400925 |
tgcgacgacggagtcgacgggaaatgatggacgtttacggcggaatcagtcgttggaggtggtggttccggcgaattttttaacgtcacttatctaatac |
53401024 |
T |
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| Q |
223 |
cttcacatctctg |
235 |
Q |
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| T |
53401025 |
cttcacatctctg |
53401037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 9963054 - 9962960
Alignment:
| Q |
22 |
attcaagattcttcaagttgtagaagtgagattgaaaatcatcaggaagaaattcaaaatcgaaatgaagaacaatcgaaat--gagattgttgc |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||| |||| ||||||||||| |
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| T |
9963054 |
attcaagattcttcaagttgtagaaatgagattgaaaatcttcaggaagaaattcagaatcggaacgaagaacaatcaaaatcggagattgttgc |
9962960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 53400849 - 53400890
Alignment:
| Q |
22 |
attcaagattcttcaagttgtagaagtgagattgaaaatcat |
63 |
Q |
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| T |
53400849 |
attcaagattcttcaagttgtagaagtgagattgaaaatcat |
53400890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 9962900 - 9962845
Alignment:
| Q |
140 |
cgggaaatgatggacgtttacggcggaatcagtcgttgggggtggtggttccggcg |
195 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||| |
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| T |
9962900 |
cgggaaatgatggccgtctacggcggaatcagtcgatggaggtggtggttccggcg |
9962845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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