View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_19 (Length: 236)
Name: NF4117_low_19
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_19 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 24555094 - 24554873
Alignment:
| Q |
15 |
acaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
24555094 |
acaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatctggcttgttaatgaactcgatctcaagatcggtaccgg |
24554995 |
T |
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| Q |
115 |
taacgatattactagtgctgttttcaagtatggtgaatttaactggtaaaccagttacagcattattttgtaggacagttagtggacacactgaatcacc |
214 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24554994 |
taacgatgttactagtgctgttttctagtatggtgaatttaactggtaaaccagttacagcattattttgtaggacagttagtggacacactgaatcacc |
24554895 |
T |
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| Q |
215 |
aactttgtctagggttagtcct |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
24554894 |
aactttgtctagggttagtcct |
24554873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 2930699 - 2930482
Alignment:
| Q |
19 |
aacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaac |
118 |
Q |
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| T |
2930699 |
aacttagttgagtattatgatcaacaaacatcaaccattttgatgcttcagcacaatcagcctttttagtgaactcgatctcaagatcggtaccggtcaa |
2930600 |
T |
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| Q |
119 |
gatattactagtgctgttttcaagtatggtgaatttaactggtaaaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaact |
218 |
Q |
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| T |
2930599 |
gatattaccagtgctgttttctgggatggtgaatttaactggtaaacctatcatagcattattttgtaggacagttactggacactctaaattaccaact |
2930500 |
T |
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| Q |
219 |
ttgtctagggttagtcct |
236 |
Q |
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|||| ||||||||||||| |
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| T |
2930499 |
ttgtttagggttagtcct |
2930482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 2917111 - 2916894
Alignment:
| Q |
19 |
aacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaac |
118 |
Q |
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||||||||||||| |||||||| || |||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |
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| T |
2917111 |
aacttagttgagtattatgatcaagaaacatcaaccattttgatgattcagcacaatcaggcttcttagtaaactcaatctcaagatcggtaccagtcaa |
2917012 |
T |
|
| Q |
119 |
gatattactagtgctgttttcaagtatggtgaatttaactggtaaaccagttacagcattattttgtaggacagttagtggacacactgaatcaccaact |
218 |
Q |
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| T |
2917011 |
gatattaccggtgttgttttctgggacggtgaatttaactggtaaacctatcatagcattattttgtaggacagttactggacattctaaatcaccaact |
2916912 |
T |
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| Q |
219 |
ttgtctagggttagtcct |
236 |
Q |
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|||| || |||||||||| |
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| T |
2916911 |
ttgtttaaggttagtcct |
2916894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 24566797 - 24566576
Alignment:
| Q |
15 |
acaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccgg |
114 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||||||| || |||| ||| |||||||||||| |||||||||| ||||||||||| ||||| | |
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| T |
24566797 |
acaaaacttagttgagtgtcatgatcaacaaacatcgaccatttcgacgatttagcgcaatcaggcttcgtagtgaactcaatctcaagatcagtacctg |
24566698 |
T |
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| Q |
115 |
taacgatattactagtgctgttttcaagtatggtgaatttaactggtaaaccagttacagcattattttgtaggacagttagtggacacactgaatcacc |
214 |
Q |
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| ||||||||||||||| ||||| | ||| ||||||||||||||||||| |||||| | ||| ||||| ||| |||| ||||||| || ||||| | |
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| T |
24566697 |
gcaagatattactagtgctattttctaacatgctgaatttaactggtaaacctattacagtaatatcttgtacgacggttactggacactctaaatcatc |
24566598 |
T |
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| Q |
215 |
aactttgtctagggttagtcct |
236 |
Q |
| |
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|| ||||| |||| |||||||| |
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| T |
24566597 |
aattttgtttaggattagtcct |
24566576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 20505635 - 20505583
Alignment:
| Q |
48 |
atcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctc |
100 |
Q |
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||||||||||| || |||||| |||||||||||||||| |||||||| ||||| |
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| T |
20505635 |
atcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatctc |
20505583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 20475841 - 20475777
Alignment:
| Q |
38 |
atcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaa |
102 |
Q |
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|||||||| ||||||||||| || |||||| | |||| ||||||||| ||||||||||| |||| |
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| T |
20475841 |
atcaacaaatatcaaccattttgatgattcaacgcaattaggcttctttgtgaactcgatatcaa |
20475777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 13072300 - 13072369
Alignment:
| Q |
33 |
acatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaa |
102 |
Q |
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|||| |||||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||| |||| |
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| T |
13072300 |
acattatcaacaaatatcaaccattttgaagattcaacacaatcaggcttcctaacgaactcgatatcaa |
13072369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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