View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_3 (Length: 453)
Name: NF4117_low_3
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 164 - 442
Target Start/End: Original strand, 69683 - 69961
Alignment:
| Q |
164 |
ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa |
263 |
Q |
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| T |
69683 |
ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa |
69782 |
T |
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| Q |
264 |
gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca |
363 |
Q |
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| T |
69783 |
gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca |
69882 |
T |
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| Q |
364 |
catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctgtgctg |
442 |
Q |
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| T |
69883 |
catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctgcgctg |
69961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 69519 - 69650
Alignment:
| Q |
21 |
aacaactcagttacaaagctgttttccaaacccaaggtatgtctgtctgtctatgtcattgctattgatatactgttacttagtatttgattctcatcac |
120 |
Q |
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| T |
69519 |
aacaactcagttacaaagctgttttccaaacgcaaggtatgtctat--gtctatgtcattgctattgatatactgttacttagtatttgattctcatcac |
69616 |
T |
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| Q |
121 |
ttgtcttgttttgtgtttatttagcattactaca |
154 |
Q |
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| T |
69617 |
ttgtcttgttttgtgtttatttagcattactaca |
69650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 32427647 - 32427559
Alignment:
| Q |
316 |
gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatct |
404 |
Q |
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| T |
32427647 |
gagaagcttctacaagcaggcatgaatgtcgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatct |
32427559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 32421792 - 32421722
Alignment:
| Q |
334 |
ggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatct |
404 |
Q |
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| T |
32421792 |
ggtatgaacgttgccagattcaacttctctcatggttctcatgactatcatcaggaaactcttgataatct |
32421722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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