View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_6 (Length: 351)
Name: NF4117_low_6
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 3580504 - 3580183
Alignment:
| Q |
18 |
aaggtggattgttttgttaagtccaatgagaggtttttgccatcattccatcaattgtgagtgtattattcaatacaagtgttaatgaagtacattgcaa |
117 |
Q |
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| T |
3580504 |
aaggtggattgttctgttaagtctaatgagaggtttctgccatcattccatcaattgtgagtgtattattcaatacaagttttaatgaagtacattgcaa |
3580405 |
T |
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| Q |
118 |
gcttatataacatattgtgaatgcatagaacccaactaacccataactaactcctataactacttcaaataatgtctactctccaatataatgccttcta |
217 |
Q |
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| T |
3580404 |
gcttatataacatattgtgaatgcatagaacccaactaacccataactaactcctataactacttcaaataatgtctactctccaatataatgccttcta |
3580305 |
T |
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| Q |
218 |
gacttcaacacacctcctagaactaaggcatgtaaatgtctagaagaccaagcttggtaaacaatcaatggaaattggcaggatgcaatgtcctgttgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3580304 |
gacttcaacacacctcctagaactaaggcatgtaaatgtctagaagaccaagcttggtaaacaatcaatggaaattggcaggatgcaatgtcttgttgag |
3580205 |
T |
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| Q |
318 |
gatgtatatgccgtttgatgatgt |
341 |
Q |
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|||| ||||||||||||| |||| |
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| T |
3580204 |
gatg--tatgccgtttgatcatgt |
3580183 |
T |
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