View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_8 (Length: 334)
Name: NF4117_low_8
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 6507563 - 6507888
Alignment:
| Q |
1 |
tcaacaacattgtgaaaattggaatcgtcttcatcagaagaagaagaaggatatatgaaatttgttctagcattgctacctttgatggaaagagcagctc |
100 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507563 |
tcaacaacattgtgaaaattggtatcatcttcatcagaagaagaagaaggatatatgaaatttgttctagcattgctacctttgatggaaagagcagctc |
6507662 |
T |
|
| Q |
101 |
tatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctacccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507663 |
tatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctacccca |
6507762 |
T |
|
| Q |
201 |
aggtcttctccttacaccaagaaacttacctggttcggcttgcttttttctgcctcttttttcgccacaaaccgacgtgtttcgttgaagtaaagataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6507763 |
aggtcttctccttacaccaagaaacttacctggttctgcttgcttttttctgcctcttttttcgccacaaaccgaagtgtttcgttgaagtaaagataaa |
6507862 |
T |
|
| Q |
301 |
tttatttggatttgattgtgatgatg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
6507863 |
tttatttggatttgattgtgatgatg |
6507888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 79 - 268
Target Start/End: Complemental strand, 49385857 - 49385668
Alignment:
| Q |
79 |
cctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaa |
178 |
Q |
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|
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | |||||||||||||||||||| ||| ||||||| |
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| T |
49385857 |
cctttcatggaaatagcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaa |
49385758 |
T |
|
| Q |
179 |
tttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggttcggcttgcttttttctgcctcttttttcgccac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| | ||| || |||| ||||||||||| |||| |
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|
| T |
49385757 |
tttcagcagcatatctaccccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccac |
49385668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 32557959 - 32558035
Alignment:
| Q |
97 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
173 |
Q |
| |
|
||||| || ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||| |||||| |
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|
| T |
32557959 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
32558035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 43848271 - 43848378
Alignment:
| Q |
115 |
gcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctaccccaaggtcttctcctta |
214 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||| ||||| || ||| | ||||||||||| |||||||| ||||| |||||| | || | |
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| T |
43848271 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
43848370 |
T |
|
| Q |
215 |
caccaaga |
222 |
Q |
| |
|
|||||||| |
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|
| T |
43848371 |
caccaaga |
43848378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 30656682 - 30656730
Alignment:
| Q |
102 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
150 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||||||||||||||||||| |
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|
| T |
30656682 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaa |
30656730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 30698624 - 30698672
Alignment:
| Q |
102 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
150 |
Q |
| |
|
||||||||| |||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
30698624 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa |
30698672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 30710507 - 30710555
Alignment:
| Q |
102 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
150 |
Q |
| |
|
||||||||| |||||||| |||| |||| ||||||||||||||| |||| |
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| T |
30710507 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa |
30710555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 25986059 - 25986015
Alignment:
| Q |
93 |
agcagctctatcataagcaaaagcagcttcttgagcagtatcaaa |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||||| |
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|
| T |
25986059 |
agcagctctatcataagccaaagcagcttcttcagcagtgtcaaa |
25986015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 2653519 - 2653574
Alignment:
| Q |
94 |
gcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaacca |
149 |
Q |
| |
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||||||||||||||| | ||||||||||||| ||| |||||| |||| |||||||| |
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|
| T |
2653519 |
gcagctctatcataaaccaaagcagcttcttcagcggtatcatatgtccctaacca |
2653574 |
T |
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