View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4117_low_9 (Length: 327)
Name: NF4117_low_9
Description: NF4117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4117_low_9 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 13642257 - 13642504
Alignment:
| Q |
2 |
aaccattgtcaaataaaattcacacttgaattgaaattatttgttgctaaatggtta-gtgatgtttaatagaattgaaaatttacaatatagaataaca |
100 |
Q |
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| T |
13642257 |
aaccattgtcaaataaaattcacacttcaattgaaattatttgttgctaaatggttaagtgatgtttaatagaattgaaaatttacaatataaaataaca |
13642356 |
T |
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| Q |
101 |
gaaccctaaattttcaatggttgattttcatgtgatatttagtcatgttaacttacctttgggtcgattaatactcttcttgttcaatttctgaaaaaat |
200 |
Q |
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| T |
13642357 |
gaaccctaaattttcaatggttgattttcatgtgatatttagtcatgttaatttacctttgggtcgattaatac---tcttgttcaatttctgaaaaaat |
13642453 |
T |
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| Q |
201 |
tgaatcataatattctagattgggtatgaagatggagcctatttcgatgtg |
251 |
Q |
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| T |
13642454 |
agaatcataatattctagattgggtatgaagatggagcctatttcgatgtg |
13642504 |
T |
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Target: scaffold0036 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 243
Target Start/End: Complemental strand, 55846 - 55678
Alignment:
| Q |
76 |
tgaaaatttacaatatagaataacagaaccct-aaattttcaatggttgattttcatgtgatatttagtcatgttaacttacctttgggtcgattaatac |
174 |
Q |
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| T |
55846 |
tgaaaatttacaatataaaataacagaacccccaaattttcaatcgttgattttcatgtggaatttggtcatgacaatttagctttgggttgattgattt |
55747 |
T |
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| Q |
175 |
tcttcttgttcaatttctgaaaaaattgaatcataatattctaga-ttgggtatgaagatggagcctatt |
243 |
Q |
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| T |
55746 |
tcttcttattccatttgtgaaaaaa-tgaataataatattctagatttggggatggagatggagcctatt |
55678 |
T |
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