View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4118_high_8 (Length: 334)

Name: NF4118_high_8
Description: NF4118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4118_high_8
NF4118_high_8
[»] chr2 (1 HSPs)
chr2 (12-334)||(31154884-31155206)
[»] chr7 (2 HSPs)
chr7 (235-334)||(28125763-28125862)
chr7 (291-334)||(44962371-44962414)
[»] chr6 (1 HSPs)
chr6 (235-334)||(5377661-5377760)
[»] chr4 (2 HSPs)
chr4 (235-334)||(52519543-52519642)
chr4 (63-181)||(9668690-9668808)
[»] chr1 (1 HSPs)
chr1 (228-334)||(17450143-17450249)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 31155206 - 31154884
Alignment:
Q  12 aaaggtgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcgatcaagtgttcaagcctcctcttcaatgatcaattgtcaacacg 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31155206 aaagatgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcaatcaagtgttcaagcctcctcttcaatgatcaagtgtcaacacg 31155107  T
Q  112 cagacaaagttgatcgatttttgcaagatcgcaattgcaagaaaggtgagaagctttctgattcactaatacgtttgtcggggtgcatctctgtttttta 211  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  31155106 cggacaaagttgatcgatttttgcaagatcacaattgcaagaaaggtgagaagctttctgattcactaatatgttcgtcggggagcatctctgtttttta 31155007  T
Q  212 ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31155006 ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattttggtgtatgttgttcccaaagttcttcgtcacacatg 31154907  T
Q  312 ttcacgtttgtggtggatacctt 334  Q
    |||||||||||||||||||||||    
T  31154906 ttcacgtttgtggtggatacctt 31154884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 28125862 - 28125763
Alignment:
Q  235 gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt 334  Q
    ||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| |||||||||||||    
T  28125862 gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttcgcaaagtacttcttcacacatgttcgcgtttatggtggatacctt 28125763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 44962371 - 44962414
Alignment:
Q  291 caaagttcttcgtcacacatgttcacgtttgtggtggatacctt 334  Q
    |||||||||||| |||||| |||||||||| |||||||||||||    
T  44962371 caaagttcttcgccacacacgttcacgtttatggtggatacctt 44962414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 5377661 - 5377760
Alignment:
Q  235 gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt 334  Q
    ||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| |||||||||||||    
T  5377661 gatttcgtattcgatcccggcggtgctttttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt 5377760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 52519543 - 52519642
Alignment:
Q  235 gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt 334  Q
    ||||| ||||| ||||| || ||||| ||||| |||||| |||| | |||||||| |||||| |||| |||||||||||| ||||| |||||||||||||    
T  52519543 gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt 52519642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 9668690 - 9668808
Alignment:
Q  63 aatcgatcaagtgttcaagcctcctcttcaatgatcaattgtcaacacgcagacaaagttgatcgatttttgcaagat-cgcaattgcaagaaaggtgag 161  Q
    |||| |||||||| |||||||||| |||| |||||||| ||| |||||| ||||||||||| || ||| | |||||||  |||  | ||||||||||||     
T  9668690 aatcaatcaagtggtcaagcctccacttctatgatcaagtgtaaacacgaagacaaagttggtcaattctcgcaagataagcacat-caagaaaggtgaa 9668788  T
Q  162 aagctttctgattcactaat 181  Q
    ||||||| |||||| |||||    
T  9668789 aagctttttgattcgctaat 9668808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 17450143 - 17450249
Alignment:
Q  228 ttgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtgg 327  Q
    ||||| |||||||||||| ||||| || ||   | ||||||| |||| | ||| ||||||   |||||||||||  |||||| |||||||||| ||||||    
T  17450143 ttgttcagattttgtattcgatcccggcggaatgatttctttaattccgttgtgtgttgtcgtcaaagttcttcaccacacacgttcacgtttatggtgg 17450242  T
Q  328 atacctt 334  Q
    |||||||    
T  17450243 atacctt 17450249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University