View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4119_high_1 (Length: 575)
Name: NF4119_high_1
Description: NF4119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4119_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 194 - 570
Target Start/End: Complemental strand, 21580509 - 21580133
Alignment:
| Q |
194 |
ccaacacgtaagcttattttagcttatttnnnnnnngagaaagcttattttagcttatttctacaagttcttcaaggtagctaataaaaacaacttataa |
293 |
Q |
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| T |
21580509 |
ccaacacgtaagcttattttagcttatttaaaaaaagagaaagcttattttagcttatttctacaagttcttcaaggtagctaataaaaacaacttataa |
21580410 |
T |
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| Q |
294 |
cgtataagaaaaacaattgaccttaatttgctataaattgcaaattaagttttatccaaacagggctaaaacgacactcaaaaactttctaactcacatc |
393 |
Q |
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| T |
21580409 |
cgtataagaaaaacaattgaccttaatttgctataaattgcaaattaagttttatccaaacagggctaaaacgacactcaaaaactttctaactcacatc |
21580310 |
T |
|
| Q |
394 |
tgagggaaaaatttgatttgaacggaagaatcgtattattggaatggaaaattgaaagaaaatggagaaaagaattctccactttaccaaggatctttcc |
493 |
Q |
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| T |
21580309 |
ttagggaaaaatttgatttgaacggaagaatcgtattattggaatggaaaattgaaagaaaatggagaaaagaattctccactttaccaaggatctttcc |
21580210 |
T |
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| Q |
494 |
tctgactcacaatctatcaaatgaacataatgatttaataatatctcctcatttctccatttatacatgatgatgtc |
570 |
Q |
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| T |
21580209 |
tctgactcacaatctatcaaatgaacataatgatttaataatatctcctcatttctccatttatacatgatgatgtc |
21580133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 21580710 - 21580625
Alignment:
| Q |
5 |
caaagacagcagcaagacatcacctctcaagaggtgtattatggaaaacaattcaacccatcacagttcatttacaattacaaccc |
90 |
Q |
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| T |
21580710 |
caaagacagcagcaagacatcacctctcaagaggtgtattatggaaaacaattcaacccatcacagttcatttacaattacaaccc |
21580625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 41197669 - 41197629
Alignment:
| Q |
271 |
tagctaataaaaacaacttataacgtataagaaaaacaatt |
311 |
Q |
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||||| |||||||||||||||||||||||| ||||| |||| |
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| T |
41197669 |
tagcttataaaaacaacttataacgtataaaaaaaataatt |
41197629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 40439105 - 40439041
Alignment:
| Q |
241 |
ttttagcttatttctacaagttcttcaaggtagctaataaaaacaacttataacgtataagaaaa |
305 |
Q |
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| T |
40439105 |
ttttaacttatttccataagctcttcaggatagctaatgaaaacaacttataacatatatgaaaa |
40439041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 17822877 - 17822964
Alignment:
| Q |
234 |
aagcttattttagcttatttctacaagttcttcaaggtagctaataaaaacaacttataacgtataagaaaaacaattgaccttaattt |
322 |
Q |
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| T |
17822877 |
aagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttatagcatataa-aataacaatttaacttaattt |
17822964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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