View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4119_high_2 (Length: 442)
Name: NF4119_high_2
Description: NF4119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4119_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 18345973 - 18346411
Alignment:
| Q |
1 |
ccctaagtaagtttcaccataacaatccaaactcatcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345973 |
ccctaagtaactttcaccataacaatccaaactcgtcatatatagatatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgt |
18346072 |
T |
|
| Q |
101 |
tcttgttgctcttgctcttgtgttcattgcattgaactcatcaatatctatagtggagtctaggaaactgtctaaccctaattccaatatgaggagcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
18346073 |
tcttgttgctcttgctcttgtgttcattgcattgaactcatcaacgtctatagtggaatctaggaaactgtctaaccctaattccaatttgatgagcctt |
18346172 |
T |
|
| Q |
201 |
gaagcaagattaaaggtgagtggtgatgagccttctaattgttgggagtcgctatttaagcttcaagcatgtagtggtgaaattattacattttttctta |
300 |
Q |
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| T |
18346173 |
gaagcaagattgaaggtgagtggtgatgagccttctaattgttgggagtcactatttaagcttcaagcatgtagtggtgaaattattacattttttctaa |
18346272 |
T |
|
| Q |
301 |
atggtgagacttatttgggaaatggttgttgcaaagcaattagggttgttggacatgattgttggcctaaccttgttgcatcacttggatttactaatga |
400 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
18346273 |
atggtgagacttacttgggctatggttgttgcaaagcaattagggttattggacatgattgttggcctaacgttgttgcatcacttggattcactaatga |
18346372 |
T |
|
| Q |
401 |
agaaactgatgtattggaaggttattgtgatcaggttga |
439 |
Q |
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| T |
18346373 |
agaaactgatttattggaaggttattgtgatcaggttga |
18346411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 18357801 - 18358240
Alignment:
| Q |
1 |
ccctaagtaagtttcaccataacaatccaaactcatcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18357801 |
ccctaagtaagtttcaccataacaatccaaactcgtcatatatagaaatataaaaaatttcttctaatactaaaatggcttcctctcataaaatatttgt |
18357900 |
T |
|
| Q |
101 |
tcttgttgctcttgctcttgtgttcattgcattgaactcatcaatatctatagtggagtctaggaaactgtctaaccctaattccaatatgaggagcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
18357901 |
tcttgttgctcttgctcttgtgttcattgcattgaactcatcaacgtctatagtggaatctaggaaactgtctaaccctaattccaatttgatgagcctt |
18358000 |
T |
|
| Q |
201 |
gaagcaagattaaaggtgagtggtgatgagccttctaattgttgggagtcgctatttaagcttcaagcatgtagt-ggtgaaattattacattttttctt |
299 |
Q |
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| T |
18358001 |
gaagcaagattgaaggtgagtggtgatgagccttctaattgttgggagtcactatttaagcttcaagcatgtagtgggtgaaattgttacattttttcta |
18358100 |
T |
|
| Q |
300 |
aatggtgagacttatttgggaaatggttgttgcaaagcaattagggttgttggacatgattgttggcctaaccttgttgcatcacttggatttactaatg |
399 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||| |
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| T |
18358101 |
aatggtgagacttacttgggctatggttgttgcaaagcaattagggttattggacatgattgttggcctaacgttgttgcatcacttggattcaccaatg |
18358200 |
T |
|
| Q |
400 |
aagaaactgatgtattggaaggttattgtgatcaggttga |
439 |
Q |
| |
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| T |
18358201 |
aagaaactgatgtattagaaggttattgtgatcaggttga |
18358240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 194 - 431
Target Start/End: Complemental strand, 42005430 - 42005196
Alignment:
| Q |
194 |
gagccttgaagcaagattaaaggtgagtggtgatgagccttctaattgttgggagtcgctatttaagcttcaagcatgtagtggtgaaattattacattt |
293 |
Q |
| |
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|||||||||||||||||| ||||||||||| || |||||||||||||||| |||| || || ||||| ||||||||||||||||||||||| |||||| |
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| T |
42005430 |
gagccttgaagcaagattgaaggtgagtggcga---gccttctaattgttggcagtcactcttcaagctccaagcatgtagtggtgaaattataacattt |
42005334 |
T |
|
| Q |
294 |
tttcttaatggtgagacttatttgggaaatggttgttgcaaagcaattagggttgttggacatgattgttggcctaaccttgttgcatcacttggattta |
393 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| || |||||||| | |
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| T |
42005333 |
tttctaaatggtgagacttatttaggaaatggttgttgtaaagcaattagggttattggacatgattgttggcctaatatggttgcttcgcttggattca |
42005234 |
T |
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| Q |
394 |
ctaatgaagaaactgatgtattggaaggttattgtgat |
431 |
Q |
| |
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| ||||||||| || || |||||||||||||||||||| |
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| T |
42005233 |
ccaatgaagaatcttatatattggaaggttattgtgat |
42005196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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