View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4119_low_3 (Length: 238)
Name: NF4119_low_3
Description: NF4119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4119_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 4803325 - 4803114
Alignment:
| Q |
18 |
agatcagtcttgggacaaatataagacacatagtgaatgaatgccatgcctgaagactaagcaccaacatctagcacctcacttcatctttaaatcaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803325 |
agatcagtcttgggacaaatataagacacatagtgaatgaatgccatgcctgaagactaagcaccaacatctagcacctcacttcatctttaaatcaatc |
4803226 |
T |
|
| Q |
118 |
acaggcatatttttatagtaaacaatcattatgctaacccctatgaagtgtatataacaatttaccacaatgaattcaagtgcacaaatcttatacgcaa |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803225 |
acaagcatatttttatagtaaacaatcattatgctaacccctatgaagtgtatataacaatttaccacaatgaattcaagtgcacaaatcttatacgcaa |
4803126 |
T |
|
| Q |
218 |
gaaacatagtat |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4803125 |
gaaacatagtat |
4803114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 21167701 - 21167591
Alignment:
| Q |
71 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcacaggcatatttttatagtaaacaatcattatgctaacccctatgaagtgtat |
170 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||||| || | |||||||| ||| ||||| |||| |||| | |||||||| |
|
|
| T |
21167701 |
agactaagcactaatgtctagcacctcacttcatctttaaattaatcacaaccaaagttttatagcttccaaccattagactaaaccctgtaaagtgtat |
21167602 |
T |
|
| Q |
171 |
ataacaattta |
181 |
Q |
| |
|
||||||||||| |
|
|
| T |
21167601 |
ataacaattta |
21167591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 11578930 - 11578881
Alignment:
| Q |
71 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
120 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11578930 |
agactaaggactaacatctagtacctcacttcatctttaaatcaatcaca |
11578881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 31714759 - 31714710
Alignment:
| Q |
71 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
120 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
31714759 |
agactaaggactaacgtctagtacctcacttcatctttaaatcaatcaca |
31714710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 2595124 - 2595173
Alignment:
| Q |
71 |
agactaagcaccaacatctagcacctcacttcatctttaaatcaatcaca |
120 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2595124 |
agactaaggactaacgtctagtacctcacttcatctttaaatcaatcaca |
2595173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University