View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4119_low_4 (Length: 238)
Name: NF4119_low_4
Description: NF4119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4119_low_4 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 18357512 - 18357740
Alignment:
| Q |
10 |
catcatcatggcttaattcaaggaaaatggagatttttgaattagaatgttacccaaatgttcatcgtgccctaatggagacaaatagactatagaatca |
109 |
Q |
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| T |
18357512 |
catcatcatggcttaattcaaggaaaatggagatttttgaattagaatattacccaaatgttcatcgtgccctaatggagacaaatagactatagaatca |
18357611 |
T |
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| Q |
110 |
attgtcatttaaattcaacccggttgttattgctgttatatctccatcatagagaatatgaacatcctcaatctttcatatacacttttcttatgtaacc |
209 |
Q |
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| T |
18357612 |
attgtcatttaaattcaactcagttattattactgttatatctccatcatagagaatatgaacatcctcaatctttcatatacacttttcttatgtaacc |
18357711 |
T |
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| Q |
210 |
actgcacatttatgtttacccttcatctc |
238 |
Q |
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| T |
18357712 |
actgcacatttatgtttacccttcatctc |
18357740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 18345724 - 18345903
Alignment:
| Q |
59 |
ttacccaaatgttcatcgtgccctaatggagacaaatagactatagaatcaattgtcatttaaattcaacccggttgttattgctgttatatctccatca |
158 |
Q |
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| T |
18345724 |
ttacacaaatgttcatcgtgccctaatggagacaaatagactatagaatcaattgtcatttaaattcaacccagttattattactgttatatctccatca |
18345823 |
T |
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| Q |
159 |
tagagaatatgaacatcctcaatctttcatatacacttttcttatgtaaccactgcacatttatgtttacccttcatctc |
238 |
Q |
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| T |
18345824 |
tagagaatatgaacatcctcaatctttcatatacacttttcttatgtaaccactgcacatttatgtttacccttcatctc |
18345903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18343507 - 18343551
Alignment:
| Q |
12 |
tcatcatggcttaattcaaggaaaatggagatttttgaattagaa |
56 |
Q |
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| T |
18343507 |
tcatcatggcttaattcaaggaaaatggagatttttgaattagaa |
18343551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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