View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4120_high_6 (Length: 239)
Name: NF4120_high_6
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4120_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 35372414 - 35372631
Alignment:
| Q |
10 |
tcatcattattatcaagaagagttttgatagaaggagtttgtcaaaccgtttgtcaaaccctgaacattgatattggtgttggatcaatgagaagagttt |
109 |
Q |
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| T |
35372414 |
tcatcgttattatcaagaagagtttcgatagaaggagtttgtcaga--gtttgtcgaaccctagacattgaaattggtgttggatcaatgagaagagttt |
35372511 |
T |
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| Q |
110 |
aggcaattgaactaaatgcaaccgaataaatgagacactcgtatcttttcccaaaattttaagttattaaattatagatcctctcgtttatatattgatc |
209 |
Q |
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|||||||||||| ||| | || ||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
35372512 |
aggcaattgaaccaaaagtaattgaataaatgagacactcatatcttatcctaaaatcttaagttattaaattatagatcctctcgtttatatattggtc |
35372611 |
T |
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| Q |
210 |
aacacttgttttttcatctc |
229 |
Q |
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||||||| ||||| ||||| |
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| T |
35372612 |
aacactttcttttttatctc |
35372631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 35369114 - 35369324
Alignment:
| Q |
12 |
atcattattatcaagaagagttttgatagaaggagtttgtcaaaccgtttgtcaaaccctgaacattgatattggtgttggatcaatgagaagagtttag |
111 |
Q |
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|||||| ||||||||||||||||||||| || ||||| ||| ||| ||||||||||| | || ||||||| ||||||| |||||||||||| ||| |
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| T |
35369114 |
atcattcttatcaagaagagttttgatacaaagagttggtcgaactctttgtcaaaccatcgactctgatattatggttggattaatgagaagagtctag |
35369213 |
T |
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| Q |
112 |
gcaattgaactaaatgcaaccgaataaatgagacactcgtatcttttcccaaaattttaagttattaaattatagatcctctcgtttatatattgatcaa |
211 |
Q |
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|||| || ||| ||||||| | ||||||||||||| ||||| | |||||| |||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
35369214 |
aagattggaccaaaagcaaccgcacaaatgagacactcacatcttatttcaaaatcttaagttattgaattatagatcttctcatttatatattgatcaa |
35369313 |
T |
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| Q |
212 |
cacttgttttt |
222 |
Q |
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| T |
35369314 |
caattattttt |
35369324 |
T |
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