View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4120_high_8 (Length: 207)

Name: NF4120_high_8
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4120_high_8
NF4120_high_8
[»] chr8 (2 HSPs)
chr8 (18-207)||(12802450-12802640)
chr8 (175-207)||(23487061-23487093)
[»] chr5 (3 HSPs)
chr5 (176-207)||(27873353-27873384)
chr5 (174-207)||(3028009-3028042)
chr5 (175-207)||(23260146-23260178)
[»] chr3 (4 HSPs)
chr3 (176-207)||(6784731-6784762)
chr3 (177-207)||(1111656-1111686)
chr3 (173-207)||(50433397-50433431)
chr3 (175-207)||(28875259-28875291)
[»] chr7 (2 HSPs)
chr7 (177-207)||(9140541-9140571)
chr7 (174-207)||(2290024-2290057)
[»] chr4 (3 HSPs)
chr4 (174-207)||(46949988-46950021)
chr4 (175-207)||(4415962-4415994)
chr4 (177-205)||(18882350-18882378)
[»] chr6 (1 HSPs)
chr6 (175-207)||(402629-402661)
[»] chr2 (1 HSPs)
chr2 (175-207)||(31751066-31751098)
[»] chr1 (2 HSPs)
chr1 (175-207)||(9413333-9413365)
chr1 (175-207)||(25509206-25509238)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 12802450 - 12802640
Alignment:
Q  18 ttcgagagattagtctctacaattgtaattaaactttacctatgtnnnnnnnngaaagaagaacacttacttaacccttnnnnnnn-cacacaaataagc 116  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||        |||||||||||||    
T  12802450 ttcgagagattaatctctacaattgtaattaaactttacctaagtaaaaaaaagaaagaagaacacttacttaacccttaaaaaaaacacacaaataagc 12802549  T
Q  117 acatataaatcaatacctgaaatccatgtcctcaaatttgaaacatctccggtgtaatttatactatctccgtccctaattataagaccct 207  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||| ||||||||||||||||||||||||    
T  12802550 acatataaatcaatacctgaaatccatgtcctcaaatttgtaacatcttcaatgtaatttatactacctccgtccctaattataagaccct 12802640  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 23487061 - 23487093
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  23487061 ttatactacctccgtccctaattataagaccct 23487093  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 27873384 - 27873353
Alignment:
Q  176 tatactatctccgtccctaattataagaccct 207  Q
    ||||||||||||||||||||||||||||||||    
T  27873384 tatactatctccgtccctaattataagaccct 27873353  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 3028009 - 3028042
Alignment:
Q  174 tttatactatctccgtccctaattataagaccct 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  3028009 tttatactacctccgtccctaattataagaccct 3028042  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 23260178 - 23260146
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  23260178 ttatactacctccgtccctaattataagaccct 23260146  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 6784762 - 6784731
Alignment:
Q  176 tatactatctccgtccctaattataagaccct 207  Q
    ||||||||||||||||||||||||||||||||    
T  6784762 tatactatctccgtccctaattataagaccct 6784731  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 1111686 - 1111656
Alignment:
Q  177 atactatctccgtccctaattataagaccct 207  Q
    |||||||||||||||||||||||||||||||    
T  1111686 atactatctccgtccctaattataagaccct 1111656  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 50433431 - 50433397
Alignment:
Q  173 atttatactatctccgtccctaattataagaccct 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  50433431 atttatactacctccgtccctaattataagaccct 50433397  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 28875291 - 28875259
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  28875291 ttatactacctccgtccctaattataagaccct 28875259  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 9140571 - 9140541
Alignment:
Q  177 atactatctccgtccctaattataagaccct 207  Q
    |||||||||||||||||||||||||||||||    
T  9140571 atactatctccgtccctaattataagaccct 9140541  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 2290057 - 2290024
Alignment:
Q  174 tttatactatctccgtccctaattataagaccct 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  2290057 tttatactacctccgtccctaattataagaccct 2290024  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 46949988 - 46950021
Alignment:
Q  174 tttatactatctccgtccctaattataagaccct 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  46949988 tttatactacctccgtccctaattataagaccct 46950021  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 4415962 - 4415994
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  4415962 ttatactacctccgtccctaattataagaccct 4415994  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 18882350 - 18882378
Alignment:
Q  177 atactatctccgtccctaattataagacc 205  Q
    |||||||||||||||||||||||||||||    
T  18882350 atactatctccgtccctaattataagacc 18882378  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 402661 - 402629
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  402661 ttatactacctccgtccctaattataagaccct 402629  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 31751066 - 31751098
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  31751066 ttatactacctccgtccctaattataagaccct 31751098  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 9413365 - 9413333
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  9413365 ttatactacctccgtccctaattataagaccct 9413333  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 25509206 - 25509238
Alignment:
Q  175 ttatactatctccgtccctaattataagaccct 207  Q
    |||||||| ||||||||||||||||||||||||    
T  25509206 ttatactacctccgtccctaattataagaccct 25509238  T

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