View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4120_low_1 (Length: 630)

Name: NF4120_low_1
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4120_low_1
NF4120_low_1
[»] chr1 (4 HSPs)
chr1 (78-317)||(26541303-26541542)
chr1 (470-630)||(26541586-26541746)
chr1 (22-78)||(26540964-26541020)
chr1 (20-65)||(25958175-25958220)
[»] scaffold0394 (1 HSPs)
scaffold0394 (22-129)||(13833-13935)
[»] chr4 (3 HSPs)
chr4 (22-69)||(15050066-15050113)
chr4 (22-69)||(15104311-15104358)
chr4 (30-63)||(25643539-25643572)
[»] chr5 (2 HSPs)
chr5 (20-78)||(28142432-28142490)
chr5 (20-117)||(15544117-15544211)
[»] chr3 (2 HSPs)
chr3 (20-64)||(25756742-25756786)
chr3 (39-120)||(20397671-20397750)
[»] chr2 (1 HSPs)
chr2 (21-63)||(25936989-25937031)
[»] chr7 (2 HSPs)
chr7 (41-86)||(9916654-9916699)
chr7 (41-86)||(9924566-9924611)
[»] chr8 (2 HSPs)
chr8 (20-80)||(15292797-15292857)
chr8 (20-80)||(15473166-15473226)
[»] chr6 (1 HSPs)
chr6 (21-61)||(15614169-15614209)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 78 - 317
Target Start/End: Original strand, 26541303 - 26541542
Alignment:
Q  78 aaagatttaaggggtttttcaattttatttgtgtgcaacagagaaaggtttatgtgcaacaaagtatgaaaccgatccacacaataagaaacaaccatcc 177  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26541303 aaagagttaaggggtttttcaatttgatttgtgtgcaatagagaaaggtttatgtgcaacagagtatgaaaccgatccacacaataagaaacaaccatcc 26541402  T
Q  178 cttaaatgaattccataatttcagcaatgcctttaaatcactaactctattaagtcgtgctactacacgtgaccacataggttcatattagaatctcatt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26541403 cttaaatgaattccataatttcagcaatgcctttaaatcactaactctattaagtcgtgctactacacgtgaccacataggttcatattagaatctcatt 26541502  T
Q  278 ttaatcacagattaaataatttcatccccacacttcctcg 317  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  26541503 ttaatcacaaattaaataatttcatctccacacttcctcg 26541542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 470 - 630
Target Start/End: Original strand, 26541586 - 26541746
Alignment:
Q  470 tcacctcaaattcatactttaccattgaactctccatcttaagtctaattatattcttgtaattgttggatacttattaaacttactattttctgcttct 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  26541586 tcacctcaaattcatactttaccattgaactctccatcttaagtctagttatattcttgtaattgttggatacttattgaacttactcttttctgcttct 26541685  T
Q  570 atgcacaatgttttcttttcttgttgccatcattagcatactcgatcccacttgtattctt 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26541686 atgcacaatgttttcttttcttgttgccatcattagcatactcgatcccacttgtattctt 26541746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 26540964 - 26541020
Alignment:
Q  22 ttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagata 78  Q
    ||||||| || ||||||||||||||||||||||| |||||||| ||||||| |||||    
T  26540964 ttccaactagacaatttgcgttacttatttgggagcaataaaaataaataaaagata 26541020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 25958175 - 25958220
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaac 65  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||    
T  25958175 cgttccaaccagacaatttatgttacttatttgggaacaataaaac 25958220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 13935 - 13833
Alignment:
Q  22 ttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagataaagatttaaggggtttttcaattttatttgtgtgcaacagaga 121  Q
    ||||||| || ||||| |||||||||||||||||||||||     |||||| |||||||   | ||||||||||||||||| |||||| |||| |||||     
T  13935 ttccaactagacaattagcgttacttatttgggaacaata-----aaataaaagataaaaggtaaaggggtttttcaatttgatttgtttgcagcagagc 13841  T
Q  122 aaggttta 129  Q
    ||| ||||    
T  13840 aagattta 13833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 15050113 - 15050066
Alignment:
Q  22 ttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaa 69  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||    
T  15050113 ttccaactagacaatttgcgttacttatttgggaacaataaaaataaa 15050066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 15104311 - 15104358
Alignment:
Q  22 ttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaa 69  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||    
T  15104311 ttccaactagacaatttgcgttacttatttgggaacaataaaaataaa 15104358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 25643539 - 25643572
Alignment:
Q  30 aggcaatttgcgttacttatttgggaacaataaa 63  Q
    ||||||||| ||||||||||||||||||||||||    
T  25643539 aggcaatttacgttacttatttgggaacaataaa 25643572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 28142432 - 28142490
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagata 78  Q
    ||||||||| | |||||||| ||||||||||||||||||||| || ||||||| |||||    
T  28142432 cgttccaactatgcaatttgtgttacttatttgggaacaatataaataaataaaagata 28142490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 15544117 - 15544211
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagataaagatttaaggggtttttcaattttatttgtgtgcaaca 117  Q
    ||||| ||| |||||||  ||||||||||||||| |||||||||| ||||||| ||||||  |||||  | ||||| |||||| |||||| |||||||    
T  15544117 cgttcaaactaggcaatccgcgttacttatttggaaacaataaaa-taaataaaagataagtattta--gagttttgcaatttaatttgtttgcaaca 15544211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 25756742 - 25756786
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaa 64  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||    
T  25756742 cgttctaactaggcaatttgtgttacttatttgggaacaataaaa 25756786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 20397671 - 20397750
Alignment:
Q  39 gcgttacttatttgggaacaataaaactaaat-aagagataaagatttaaggggtttttcaattttatttgtgtgcaacagag 120  Q
    |||||||||||||||||||||||||| ||||| ||||||||| | ||||  | ||||| |||||| |||||| ||||||||||    
T  20397671 gcgttacttatttgggaacaataaaa-taaataaagagataatggttta--gagttttgcaatttaatttgtttgcaacagag 20397750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25936989 - 25937031
Alignment:
Q  21 gttccaaccaggcaatttgcgttacttatttgggaacaataaa 63  Q
    |||||||| |||||||||| ||||||||||| |||||||||||    
T  25936989 gttccaactaggcaatttgtgttacttatttaggaacaataaa 25937031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 9916654 - 9916699
Alignment:
Q  41 gttacttatttgggaacaataaaactaaataagagataaagattta 86  Q
    |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9916654 gttacttatttgggaacaattaaaataaataaaagataacgattta 9916699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 9924566 - 9924611
Alignment:
Q  41 gttacttatttgggaacaataaaactaaataagagataaagattta 86  Q
    |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9924566 gttacttatttgggaacaattaaaataaataaaagataacgattta 9924611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 15292797 - 15292857
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagataaa 80  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||  |||||| |||||||    
T  15292797 cgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaataaaagataaa 15292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 15473166 - 15473226
Alignment:
Q  20 cgttccaaccaggcaatttgcgttacttatttgggaacaataaaactaaataagagataaa 80  Q
    ||||||||  ||||||||  |||||||||||||||||||| ||||  |||||| |||||||    
T  15473166 cgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaataaaagataaa 15473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 15614209 - 15614169
Alignment:
Q  21 gttccaaccaggcaatttgcgttacttatttgggaacaata 61  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  15614209 gttccaactaggcaattcacgttacttatttgggaacaata 15614169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University