View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4120_low_2 (Length: 423)
Name: NF4120_low_2
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4120_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 7883459 - 7883253
Alignment:
| Q |
1 |
ctttcactttcatcaatgacctttaattctttacctctcatcttcaccgaataatttctttcaagtaattgaccaagacttatcgaattactactcttca |
100 |
Q |
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| T |
7883459 |
ctttcactttcatcaatgacatttaattctttacctctcatcttcaccgaatagtttctttcaagtaattgaccaagacttatcgaattact---cttca |
7883363 |
T |
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| Q |
101 |
tgcttggaacaaacatcgcatcacttatgacagattcatgtccatctttctttgaaccaagatatttccaatgccttgtgacaaaacttcattgcattgt |
200 |
Q |
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| T |
7883362 |
tgcttggaacaaacatcgcatcacttatgacagattcatgtccatctttctttgaaccaagatatttccaatgccttgtgacaaaacttcattgcattgt |
7883263 |
T |
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| Q |
201 |
ttcaccatta |
210 |
Q |
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|||||||||| |
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| T |
7883262 |
ttcaccatta |
7883253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 232 - 418
Target Start/End: Complemental strand, 7883279 - 7883090
Alignment:
| Q |
232 |
aaacatcagtgcattgtttcaccattagatttcatttgatatgtgagagttaccacttttgtgaagtaat---ccgcagttgaatcttgatttgacatct |
328 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
7883279 |
aaacttcattgcattgtttcaccattatatttcatttgatatgtgagagttaccacttttgtgaagtaataatcagcagttgaatcttgatttgacatct |
7883180 |
T |
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| Q |
329 |
acaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatctccaccataagcgttcttgataatatcccaag |
418 |
Q |
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| T |
7883179 |
acaacatttcatattggcgccttaaagctttcagcttcaccttctttatcttttcatcaccaccataagcgttcttgataatatcccaag |
7883090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7898202 - 7898118
Alignment:
| Q |
1 |
ctttcactttcatcaatgacctttaattctttacctctcatcttcaccgaataatttctttcaagtaattgaccaagacttatcg |
85 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7898202 |
ctttcactttcatcaatgacctttaattctctacctctcatcttcaccgaataatttctttcaagtaattgaccaagacttatcg |
7898118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 412
Target Start/End: Complemental strand, 44756356 - 44756254
Alignment:
| Q |
310 |
gaatcttgatttgacatctacaacatttcatattggcgccttaaagcttgcagcttcaccttctttatcttttcatctccaccataagcgttcttgataa |
409 |
Q |
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|||||||||| |||||||| | | ||||| ||||| ||||||||||||| |||||||||||| ||||| ||||| |||| |||||||||||||| || |
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| T |
44756356 |
gaatcttgatctgacatctgaaggagttcatgctggcgtcttaaagcttgcaacttcaccttcttgatcttctcatcaccacgataagcgttcttgagaa |
44756257 |
T |
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| Q |
410 |
tat |
412 |
Q |
| |
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||| |
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|
| T |
44756256 |
tat |
44756254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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