View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4120_low_5 (Length: 279)
Name: NF4120_low_5
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4120_low_5 |
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| [»] scaffold0036 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 27950830 - 27950678
Alignment:
| Q |
118 |
atctagaaatttgcattaggtcttatttagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagagtatatat--tgttaatttag |
215 |
Q |
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| T |
27950830 |
atctagaaatttgcat-aggtcttattaagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagagtatatatattgttaatttag |
27950732 |
T |
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| Q |
216 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactcggtccctatg |
269 |
Q |
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| T |
27950731 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactcggtccctatg |
27950678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 27951024 - 27950912
Alignment:
| Q |
4 |
taatcaaagttgaaatacaaagaggtacaacattaaaaatacgaatactagctaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
103 |
Q |
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| T |
27951024 |
taatcaaagtcgaaatacaaagaggtacaacattaaaaatacggggactagttaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
27950925 |
T |
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| Q |
104 |
atttatagatatg |
116 |
Q |
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| T |
27950924 |
atttatagatatg |
27950912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 44220 - 44068
Alignment:
| Q |
118 |
atctagaaatttgcattaggtcttatttagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagagtatatat--tgttaatttag |
215 |
Q |
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| T |
44220 |
atctagaaatttgcat-aggtcttattaagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagagtatatatattgttaatttag |
44122 |
T |
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| Q |
216 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactcggtccctatg |
269 |
Q |
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| T |
44121 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactctgtccctatg |
44068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 269
Target Start/End: Complemental strand, 53618 - 53471
Alignment:
| Q |
118 |
atctagaaatttgcattaggtcttatttagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagagtatatat--tgttaatttag |
215 |
Q |
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| T |
53618 |
atctagaaatttgcattaggtcttatttagagagaaacaaaatctccgaaaaagtcata------aggacaaaaagagagtatatatattgttaatttag |
53525 |
T |
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| Q |
216 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactcggtccctatg |
269 |
Q |
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| T |
53524 |
gcttttgtattaaacattaatccaggttaaaaatatctgcactcggtccctatg |
53471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 44414 - 44302
Alignment:
| Q |
4 |
taatcaaagttgaaatacaaagaggtacaacattaaaaatacgaatactagctaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
103 |
Q |
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| T |
44414 |
taatcaaagtcgaaatacaaagaggtacaacattaaaaatacggggactagttaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
44315 |
T |
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| Q |
104 |
atttatagatatg |
116 |
Q |
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| T |
44314 |
atttatagatatg |
44302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 53812 - 53700
Alignment:
| Q |
4 |
taatcaaagttgaaatacaaagaggtacaacattaaaaatacgaatactagctaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
103 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53812 |
taatcaaagtcgaaatataaagaggtacaacattaaaaatacggggactagctaagaatgtttatgttttttgtgtgtgacaattactaaattatctttt |
53713 |
T |
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| Q |
104 |
atttatagatatg |
116 |
Q |
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| T |
53712 |
atttatagatatg |
53700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 17910053 - 17910200
Alignment:
| Q |
118 |
atctagaaatttgcattaggtcttatttagggagaaacaaaatctccgaaaaagtcatatatttaaggacaaaaagagag----tatatattgttaattt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||| |
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| T |
17910053 |
atctagaaatttgcattaggtcttatttagggagaaacaaaatctccgaaaaagtcatataattaaggacataaagagagtatatatatattgttagttt |
17910152 |
T |
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| Q |
214 |
aggcttttgtattaaacattaatccaggttaaaaatatctgcactcgg |
261 |
Q |
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||| |||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
17910153 |
agggttttgtattaaacattaatctaggttaaaaatatctacactcgg |
17910200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 12928774 - 12928738
Alignment:
| Q |
4 |
taatcaaagttgaaatacaaagaggtacaacattaaa |
40 |
Q |
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| T |
12928774 |
taatcaaagtcgaaatacaaagaggtgcaacattaaa |
12928738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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