View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4120_low_6 (Length: 243)
Name: NF4120_low_6
Description: NF4120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4120_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 42690002 - 42689762
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42690002 |
accaaggtctgcatatgattattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
42689903 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42689902 |
atatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
42689803 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42689802 |
gatttctttgccaagttgggtgctaattcagatgttcatct |
42689762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23946716 - 23946956
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23946716 |
accaaggtctgcatatggttattgattcgaatatgaatgacgtcatgtgctactcagattcacttcttgcagtcaatcttattatgaatgacactccgag |
23946815 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23946816 |
atatcacacatacgccttcctcattcagaacataaaggatttgcttagtgttcgaaatataactctccatcacactttaagagaggggaaccaatgtgcg |
23946915 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23946916 |
gatttctttgccaagttgggtgctaattcagatgttcatct |
23946956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 16781467 - 16781692
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||| ||| ||||| ||||||| ||||| ||||||||| | ||||||||||| |||||||| ||||| ||||||||||| |||||||| | |||||| |
|
|
| T |
16781467 |
accaagggctgaatatggttattgacttgaacatgaatgatcttatgtgctactcagattccctccttgctgttaatcttatcatgaatgata-tccgag |
16781565 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|| ||| ||||||||| ||||||| ||| || || || ||||| || ||| || |||||||| |||||||| |||||||||||||| ||||||| | |
|
|
| T |
16781566 |
attccacatctacgccgttctcattc-gaatattaaagacttgctagttgatcggaacatctctcttcatcacaccttaagagaggggaatcaatgtgtg |
16781664 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaatt |
228 |
Q |
| |
|
|||| |||| | || |||| |||||||| |
|
|
| T |
16781665 |
gattactttgctaaattggatgctaatt |
16781692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 37145597 - 37145837
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145597 |
accaaggtctgcatatggttattgacttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
37145696 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145697 |
atatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcg |
37145796 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
37145797 |
gatttctttgccaagttgggtgctaattcagaagttcatct |
37145837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 53606489 - 53606279
Alignment:
| Q |
24 |
gatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatattacacctacgccgtcctca |
123 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| ||| |||||||| || | |
|
|
| T |
53606489 |
gatttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgctctta |
53606390 |
T |
|
| Q |
124 |
ttcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgc |
223 |
Q |
| |
|
| ||||| || || || |||| | || | || || || ||||| ||||| |||||||||||||| ||||||||||| |||||| | || || ||||| |
|
|
| T |
53606389 |
tccagaatatcaaagacctgctaaatgacaggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgc |
53606290 |
T |
|
| Q |
224 |
taattcagatg |
234 |
Q |
| |
|
||||||||||| |
|
|
| T |
53606289 |
taattcagatg |
53606279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17716567 - 17716334
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||| ||| ||||| ||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||| |
|
|
| T |
17716567 |
accaagggctgaatatggctatggacttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgag |
17716468 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagt-gttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgc |
199 |
Q |
| |
|
|| ||| ||| ||||| || ||||| ||||| || ||||||| |||| | ||| || |||||||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
17716467 |
attccacatctatgccgttcttattcaaaacattaaagatttgc-tagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgc |
17716369 |
T |
|
| Q |
200 |
ggatttcttttccaagttgggtgctaattcagatg |
234 |
Q |
| |
|
|||| ||| | || |||||||| | |||||||| |
|
|
| T |
17716368 |
agattattttgctaaattgggtgccatttcagatg |
17716334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 19017796 - 19017563
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||| ||| ||||| ||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||| |
|
|
| T |
19017796 |
accaagggctgaatatggctatggacttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgag |
19017697 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagt-gttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgc |
199 |
Q |
| |
|
|| ||| ||| ||||| || ||||| ||||| || ||||||| |||| | ||| || |||||||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
19017696 |
attccacatctatgccgttcttattcaaaacattaaagatttgc-tagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgc |
19017598 |
T |
|
| Q |
200 |
ggatttcttttccaagttgggtgctaattcagatg |
234 |
Q |
| |
|
|||| ||| | || |||||||| | |||||||| |
|
|
| T |
19017597 |
agattattttgctaaattgggtgccatttcagatg |
19017563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45211034 - 45210794
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45211034 |
accaaagtttgcatatggttattgattcgaatatgaatgacgtcatgtgctactcggattcacttcttgcagttaatcttattatgaatgacactccgag |
45210935 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210934 |
atatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcg |
45210835 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45210834 |
gatttctttgccaagttgggtgctaattcagatgttcatct |
45210794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33805916 - 33806156
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33805916 |
accaaggtttgcatatggttattgattcgaatatgaatgacgtcatgtgctactcggattcacttcttgcagttaatcttattatgaatgacactccgag |
33806015 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806016 |
atatcacacctacgccgtcctcattcagaacataaaggatttgcttaatgttcgaaatatcactctccatcacacattaagagaggggaaccaatgtgcg |
33806115 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33806116 |
gatttctttgccaagttgggtgctaattcagatgttcatct |
33806156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 30961316 - 30961142
Alignment:
| Q |
65 |
tcttgcagttaatcttattatgaatgacactccgagatattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctct |
164 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||| ||||| |||||||| ||||| | |||||| || |||||| |
|
|
| T |
30961316 |
tcttgctgttaatcttatcatgaatgataccccgagataccacacctacgccgtcctcatccagaatataaaggacttgctaattgttcggaacatctct |
30961217 |
T |
|
| Q |
165 |
ctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgctaattcagatgttcat |
239 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |||||||||| | || ||||||||||||||||||| |||| |
|
|
| T |
30961216 |
cttcatcacaccttaagagaggggaaccaatgtgtggatttctttgctaaattgggtgctaattcagatgctcat |
30961142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 11240162 - 11240352
Alignment:
| Q |
43 |
tcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatattacacctacgccgtcctcattcagaacataaaggattt |
142 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| || |||| | |||||| || ||||||| ||| ||||| ||| |||||||| || || || || || |
|
|
| T |
11240162 |
tcatgtgctactcggattccctgattgttgttcattttatcaagaatgataccccgagattccacatctacgtcgtgctcattcaaaatattaaagactt |
11240261 |
T |
|
| Q |
143 |
gcttagt-gttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgctaattcagat |
233 |
Q |
| |
|
| ||||| | ||| || ||||||||||||||||| ||||||||||||||||||||| ||||| |||| | || || ||||||| ||||||| |
|
|
| T |
11240262 |
g-ttagttgatcggaacatctctctccatcacaccttaagagaggggaaccaatgtttggattactttgctaaattaggtgctagttcagat |
11240352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 44567207 - 44567289
Alignment:
| Q |
159 |
atctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||| |||| |||| | || || |||||||||||| ||| |||||| |
|
|
| T |
44567207 |
atctctcttcatcacaccttaagagaggggaatgaatgtggagattactttactaaattaggtgctaattcatatgctcatct |
44567289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 721492 - 721720
Alignment:
| Q |
13 |
atatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatattacaccta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
721492 |
atatgattattgatttgaatatgaatgacgtcatgtgctacttggattcccttcttgtagttaatcttattatgaatgacactccgagataccacaccta |
721591 |
T |
|
| Q |
113 |
cgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttcc |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||| || |||||||||||||||||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
721592 |
cgccgtcctcattcagaatataaaggatttgctaattgttcggaacttctctctccatcacacattaagagaggggagccaatgcgcggatttctttgct |
721691 |
T |
|
| Q |
213 |
aagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
721692 |
aagttgggtgctaattcagatgctcatct |
721720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 38880704 - 38880943
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38880704 |
accaagggctgaatatgattattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactc-gag |
38880802 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcg |
200 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||||||||| | |||||| || |||||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
38880803 |
ataccacacctacgtcgtcctcattcagaatataaaggatttgctaattgttcggaacatctctctccatcacacattaagatagaggaaccaatgcgcg |
38880902 |
T |
|
| Q |
201 |
gatttcttttccaagttgggtgctaattcagatgttcatct |
241 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||| |||||| |
|
|
| T |
38880903 |
gatttctttgctaagttgggtgttaattcagatgctcatct |
38880943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 46831385 - 46831595
Alignment:
| Q |
24 |
gatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatattacacctacgccgtcctca |
123 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| ||| |||||||| || | |
|
|
| T |
46831385 |
gatttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgctctta |
46831484 |
T |
|
| Q |
124 |
ttcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgc |
223 |
Q |
| |
|
| ||||| || || || |||| | || | || || || ||||| ||||| |||||||||||||| ||||||||||| |||||| | || || ||||| |
|
|
| T |
46831485 |
tccagaatatcaaagacctgctaaatgacaggaacatttccctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgc |
46831584 |
T |
|
| Q |
224 |
taattcagatg |
234 |
Q |
| |
|
||||||||||| |
|
|
| T |
46831585 |
taattcagatg |
46831595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 42604252 - 42604196
Alignment:
| Q |
178 |
taagagaggggaaccaatgtgcggatttcttttccaagttgggtgctaattcagatg |
234 |
Q |
| |
|
|||||||||| || ||||||||||||| |||| | || |||||||||| |||||||| |
|
|
| T |
42604252 |
taagagagggaaatcaatgtgcggattactttgctaaattgggtgctatttcagatg |
42604196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 1297678 - 1297456
Alignment:
| Q |
19 |
ttattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatattacacctacgccgt |
118 |
Q |
| |
|
|||| ||||||||| ||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||| ||| ||||||||| |
|
|
| T |
1297678 |
ttatggatttgaatgtgaatgagataatgtgctactcggattcccttctagctgttaatcttattgcgaatgacactcctagataccacatctacgccgt |
1297579 |
T |
|
| Q |
119 |
cctcattcagaacataaaggatttgcttagtgttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttg |
218 |
Q |
| |
|
|| || |||| || | || |||| | || ||| || || || ||||| ||||| |||||||| ||||| ||||||||||| |||| | | || || |
|
|
| T |
1297578 |
tcttatcgagaatatcgaagacctgctaaatgatcggaacatttccctccaccacactttaagagaagggaatcaatgtgcggacttctctgctaaattt |
1297479 |
T |
|
| Q |
219 |
ggtgctaattcagatgttcatct |
241 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
1297478 |
ggtgctaattcagatgttgatct |
1297456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 8684650 - 8684848
Alignment:
| Q |
1 |
accaaggtctgcatatgattattgatttgaatatgaatgatgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgag |
100 |
Q |
| |
|
||||||| ||| ||||| ||| || ||||| ||||||||| | ||||||||||| ||||| || ||||| |||||||| || |||||||| || ||||| |
|
|
| T |
8684650 |
accaagggctgaatatggctatggacttgaacatgaatgattttatgtgctactcagattctctccttgctgttaatctcatcatgaatgatacaccgag |
8684749 |
T |
|
| Q |
101 |
atattacacctacgccgtcctcattcagaacataaaggatttgcttagt-gttcgaaatatctctctccatcacacattaagagaggggaaccaatgtgc |
199 |
Q |
| |
|
|| ||| |||||| || || ||||| ||||| || ||||||| |||| | ||| ||| ||||||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
8684750 |
attccacatctacgctgttcttattcaaaacattaaagatttgc-tagtcgatcggaatttctctcttcatcacaccttaagagagggaaatcaatgtgc |
8684848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 8639271 - 8639351
Alignment:
| Q |
159 |
atctctctccatcacacattaagagaggggaaccaatgtgcggatttcttttccaagttgggtgctaattcagatgttcat |
239 |
Q |
| |
|
|||||||| |||||| | | |||||||||||| |||||||| |||| |||| | || |||||||||| |||||||| |||| |
|
|
| T |
8639271 |
atctctcttcatcacgcttcaagagaggggaatcaatgtgcagattactttgctaaattgggtgctagttcagatgctcat |
8639351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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