View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4121_high_6 (Length: 238)
Name: NF4121_high_6
Description: NF4121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4121_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 54688921 - 54688710
Alignment:
| Q |
1 |
cttgtgtcgcctaacacgcataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688921 |
cttgtgtcgcctaacacgcataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaacc--- |
54688825 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnntggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccacacccactcattctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688824 |
------aaagaaaaaaatggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccacacccactcattctt |
54688731 |
T |
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| Q |
201 |
aaatcgaatgaacatttagac |
221 |
Q |
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|||| ||||||||||||||| |
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| T |
54688730 |
aaatgtaatgaacatttagac |
54688710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 54700868 - 54700653
Alignment:
| Q |
1 |
cttgtgtcgcctaacacgcataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaaccnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54700868 |
cttgtgtcgcctaacacgcataatatatattgagaagaatgcagatccgtagactcaaatcaacattcaacattaaggcttctctttctccttaacc-aa |
54700770 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnnnntggcagcctctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccacacccactcattctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||| |
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| T |
54700769 |
aaaaaataaaataaaaatggcagcctctcctttgaactcaaaatccaatttccatggtcgctcaaacagcttgccatctagaccacacccactcatgctt |
54700670 |
T |
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| Q |
201 |
aaatcgaatgaacattt |
217 |
Q |
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|||| ||||||||||| |
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| T |
54700669 |
aaatgcaatgaacattt |
54700653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 54693382 - 54693291
Alignment:
| Q |
126 |
tctcctttgaactcaaaatccaatttccacggtcgctcaatcagcttgccatcaagaccacacccactcattcttaaatcgaatgaacattt |
217 |
Q |
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||||||||||| ||||||| |||||||| |||||||||| ||| ||||| || ||||||||||||||||||||| ||| ||| ||||||| |
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| T |
54693382 |
tctcctttgaatacaaaatcaaatttccatggtcgctcaaacagtttgccctctagaccacacccactcattcttcaatgcaatcaacattt |
54693291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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