View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4121_low_2 (Length: 431)
Name: NF4121_low_2
Description: NF4121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4121_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Original strand, 52489071 - 52489477
Alignment:
| Q |
9 |
agcaaagggaaatagtcaatacaaactcaagtcctaactaatttaaattttaaagttaatatggtgttcaaataactatcaatagccatttagtgcatgt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52489071 |
agcaaagggaaatagtcaatacaaactcaagtcctaactaatttaaattttaaagttaatatggtgttcaaataactttcaatagccatttagtgcatgt |
52489170 |
T |
|
| Q |
109 |
ttggattaacggtgaatttggcggaattacagtgtgctactttagagcttcaattaagccatactcaatgtcaatctaaacatgcatttagacagaacac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489171 |
ttggattaacggtgaatttggcggaattacagtgtgctactttagagcttcaattaagccatactcaatgtcaatctaaacatgcatttagacagaacac |
52489270 |
T |
|
| Q |
209 |
gtaccacgccttgaacatccaaaattgttgtactggaacctatgtgtctcttagcagctatagagcaagctggaaacttgacagaaaatgttttctcaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52489271 |
gtaccacgccttgaacatccaaaattgttgtactggaacctatgcgtctcttagcagctatagagcaagctggaaatttgacagaaaatgttttctcaaa |
52489370 |
T |
|
| Q |
309 |
accctgcacatggtatctcaaatatctttccatggtagttacttgcataagcctattgggatcaacttttcctagcctctcaatataaacaggtcttccc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489371 |
accctgcacatggtatctcaaatatctttccatggtagttacttgcataagcctattgggatcaacttttcctagcctctcaatataaacaggtcttccc |
52489470 |
T |
|
| Q |
409 |
tccttat |
415 |
Q |
| |
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||||||| |
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| T |
52489471 |
tccttat |
52489477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 54780833 - 54781038
Alignment:
| Q |
210 |
taccacgccttgaacatccaaaattgttgtactggaacctatgtgtctcttagcagctatagagcaagctggaaacttgacagaaaatgttttctcaaaa |
309 |
Q |
| |
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|||||| ||||||||||| || ||||| || || ||| ||||||| ||||| ||||| |||| |||||| |||||||| | | ||| | ||||||||| |
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| T |
54780833 |
taccactccttgaacatctaagattgtggtgcttgaatctatgtgcctctttgcagcaatagtgcaagcaggaaactttattgcaaaagatttctcaaac |
54780932 |
T |
|
| Q |
310 |
ccctgcacatggtatctcaaatatctttccatggtagttacttgcataagcctattgggatcaacttttcctagcctctcaatataaacaggtcttccct |
409 |
Q |
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| T |
54780933 |
tcttgcacatggtactttacatatctatccatagttgtaacctgcatcagtttgttcggatcaacttttccaagtctttcaatataaacaggccttcctt |
54781032 |
T |
|
| Q |
410 |
ccttat |
415 |
Q |
| |
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|||||| |
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| T |
54781033 |
ccttat |
54781038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 196 - 407
Target Start/End: Original strand, 7209724 - 7209935
Alignment:
| Q |
196 |
ttagacagaacacgtaccacgccttgaacatccaaaattgttgtactggaacctatgtgtctcttagcagctatagagcaagctggaaacttgacagaaa |
295 |
Q |
| |
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|||||||| | || |||||| || |||||||||||||| |||||||| ||| |||| |||||||| ||||| ||||| ||||| |||||||| |||| || |
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| T |
7209724 |
ttagacagtaaacttaccacaccatgaacatccaaaatggttgtacttgaatctatatgtctctttgcagcaatagaacaagcaggaaacttaacagcaa |
7209823 |
T |
|
| Q |
296 |
atgttttctcaaaaccctgcacatggtatctcaaatatctttccatggtagttacttgcataagcctattgggatcaacttttcctagcctctcaatata |
395 |
Q |
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| ||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
7209824 |
acgttttctcaaaaccctgtacatggtattttaaatacctttccatggtagttacttgcataagcttattgggatcaactttacctagcctctcaatata |
7209923 |
T |
|
| Q |
396 |
aacaggtcttcc |
407 |
Q |
| |
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|||||||||||| |
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| T |
7209924 |
aacaggtcttcc |
7209935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 26671265 - 26671470
Alignment:
| Q |
210 |
taccacgccttgaacatccaaaattgttgtactggaacctatgtgtctcttagcagctatagagcaagctggaaacttgacagaaaatgttttctcaaaa |
309 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||| ||||||| ||||| | ||| || | |||||| |||||||| | | ||| | ||||||||| |
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| T |
26671265 |
taccacgccttgaacatctaagattgtggtactggaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttaatcgcaaaagatttctcaaac |
26671364 |
T |
|
| Q |
310 |
ccctgcacatggtatctcaaatatctttccatggtagttacttgcataagcctattgggatcaacttttcctagcctctcaatataaacaggtcttccct |
409 |
Q |
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| | |||||||| ||| |||||| ||||| || || ||||||||||| | || ||||| |||||||| || || ||||| |||||||| ||||||| |
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| T |
26671365 |
tcgcgtacatggtacttcacatatctatccatagttgtaacttgcataagtttgtttggatccacttttccaagtctttcaatgtaaacaggccttccct |
26671464 |
T |
|
| Q |
410 |
ccttat |
415 |
Q |
| |
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|||||| |
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| T |
26671465 |
ccttat |
26671470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 30506227 - 30506271
Alignment:
| Q |
100 |
agtgcatgtttggattaacggtgaatttggcggaattacagtgtg |
144 |
Q |
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|||||||||||||||||||||||| |||||| |||| | |||||| |
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| T |
30506227 |
agtgcatgtttggattaacggtgagtttggcagaatcatagtgtg |
30506271 |
T |
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