View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4121_low_6 (Length: 302)
Name: NF4121_low_6
Description: NF4121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4121_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 106 - 285
Target Start/End: Original strand, 15465943 - 15466126
Alignment:
| Q |
106 |
tcaaaatgtatataggagagaaaaatcacata----cctgttggccatatcaagtgttgctataagactgacctgtagcatttagtgtccgagttccctg |
201 |
Q |
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| T |
15465943 |
tcaaaatatatataggagagaaaaatcaaatatgtacctgttggccatatcaagtgttgctataagagtgatttgtagcacttagtgtctgagttccctg |
15466042 |
T |
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| Q |
202 |
agaagtagagtttttctcaggaggagcatccgaatagctcattcctttctggtttgagactgggtttttcttagtatccttagt |
285 |
Q |
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| T |
15466043 |
agaagtagggtttttctcaggaggaggatccgaatagctaatacttttctggtttgaggattggttcttcttagtatccttagt |
15466126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 18472188 - 18472151
Alignment:
| Q |
135 |
atacctgttggccatatcaagtgttgctataagactga |
172 |
Q |
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| T |
18472188 |
atacctcttggccatatcaagtgttgctataagactga |
18472151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 18477814 - 18477777
Alignment:
| Q |
135 |
atacctgttggccatatcaagtgttgctataagactga |
172 |
Q |
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| T |
18477814 |
atacctcttggccatatcaagtgttgctataagactga |
18477777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 15459669 - 15459706
Alignment:
| Q |
245 |
cctttctggtttgagactgggtttttcttagtatcctt |
282 |
Q |
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| T |
15459669 |
cctttctggtttgagagtgggtttttcttaggatcctt |
15459706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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