View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4121_low_7 (Length: 250)
Name: NF4121_low_7
Description: NF4121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4121_low_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 54689179 - 54688940
Alignment:
| Q |
11 |
cagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttacaattaaaaacacgttttcggt |
110 |
Q |
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| T |
54689179 |
cagagacatgcctaacaatactgcagttgttgctttggcatcacagcagtactacacatgtgcaaatggttatgtttacgattaaaaacacgttttcggt |
54689080 |
T |
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| Q |
111 |
gaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctctaacatttatgtaatta |
210 |
Q |
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| T |
54689079 |
gaagcatctgtattgaaaatgttataatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctctaacatttatgtaatta |
54688980 |
T |
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| Q |
211 |
tgtctgaatccaaatctggattagttggcctctctgatat |
250 |
Q |
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| T |
54688979 |
tgtctgaatccaaatctggattagttggcctctctgatat |
54688940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 54701101 - 54700895
Alignment:
| Q |
38 |
tgttgctttggcatcacagcagt--actacacatgtgcaaatggttatgtttacaattaaaaacacgtttt-cggtgaagcatctgtattgaaaatgtta |
134 |
Q |
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| T |
54701101 |
tgttgctttagcatcacagcagagaactaaacatgtgcaaatggttatatttaagattaaaa-cacatttttcggtgaagcatttgcattgaaaatgtta |
54701003 |
T |
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| Q |
135 |
taatcatgcaaatgagacagattatgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
234 |
Q |
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| T |
54701002 |
taatcatgcaaatgagacagagtatgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattag |
54700903 |
T |
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| Q |
235 |
ttggcctc |
242 |
Q |
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| T |
54700902 |
ttggcctc |
54700895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 54693633 - 54693554
Alignment:
| Q |
158 |
atgagttggggagattccttgggggagacaaggctctaacatttatgtaattatgtctgaatccaaatctggattagttg |
237 |
Q |
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| T |
54693633 |
atgagttggagagtttccatgagggagacacttctctaacatttatgcaattatgtctaattccaaatcttaattagttg |
54693554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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