View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4122_high_1 (Length: 213)

Name: NF4122_high_1
Description: NF4122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4122_high_1
NF4122_high_1
[»] chr3 (22 HSPs)
chr3 (120-213)||(53841379-53841472)
chr3 (1-54)||(53841549-53841602)
chr3 (182-213)||(50819222-50819253)
chr3 (182-213)||(50856611-50856642)
chr3 (171-213)||(44316618-44316660)
chr3 (179-213)||(49529173-49529207)
chr3 (176-213)||(4846949-4846986)
chr3 (176-213)||(20963642-20963679)
chr3 (185-213)||(8846081-8846109)
chr3 (185-213)||(8846429-8846457)
chr3 (185-213)||(12123095-12123123)
chr3 (185-213)||(13867017-13867045)
chr3 (185-213)||(19124194-19124222)
chr3 (185-213)||(21918502-21918530)
chr3 (185-213)||(34521610-34521638)
chr3 (185-213)||(35580302-35580330)
chr3 (185-213)||(35753408-35753436)
chr3 (185-213)||(40410717-40410745)
chr3 (185-213)||(41208406-41208434)
chr3 (185-213)||(44069128-44069156)
chr3 (185-213)||(45871702-45871730)
chr3 (185-213)||(54107674-54107702)
[»] chr1 (26 HSPs)
chr1 (177-213)||(51692223-51692259)
chr1 (176-213)||(5117989-5118026)
chr1 (180-213)||(11395013-11395046)
chr1 (185-213)||(9881557-9881585)
chr1 (185-213)||(10923716-10923744)
chr1 (185-213)||(14118535-14118563)
chr1 (185-213)||(16267720-16267748)
chr1 (185-213)||(16268042-16268070)
chr1 (185-213)||(18794046-18794074)
chr1 (185-213)||(19269365-19269393)
chr1 (185-213)||(19986475-19986503)
chr1 (185-213)||(23281363-23281391)
chr1 (185-213)||(25088021-25088049)
chr1 (185-213)||(28112726-28112754)
chr1 (185-213)||(30293365-30293393)
chr1 (185-213)||(30611225-30611253)
chr1 (185-213)||(32563964-32563992)
chr1 (185-213)||(33753230-33753258)
chr1 (185-213)||(34028726-34028754)
chr1 (185-213)||(34029074-34029102)
chr1 (185-213)||(34279594-34279622)
chr1 (185-213)||(40703218-40703246)
chr1 (185-213)||(42607527-42607555)
chr1 (185-213)||(45305762-45305790)
chr1 (185-213)||(50921065-50921093)
chr1 (185-213)||(51691879-51691907)
[»] chr8 (17 HSPs)
chr8 (178-213)||(14920764-14920799)
chr8 (178-213)||(37393830-37393865)
chr8 (176-213)||(7041977-7042014)
chr8 (176-213)||(30872779-30872816)
chr8 (176-213)||(35224120-35224157)
chr8 (185-213)||(119122-119150)
chr8 (185-213)||(6843500-6843528)
chr8 (185-213)||(8654289-8654317)
chr8 (185-213)||(9495376-9495404)
chr8 (185-213)||(11198558-11198586)
chr8 (185-213)||(16645901-16645929)
chr8 (185-213)||(18018139-18018167)
chr8 (185-213)||(24456739-24456767)
chr8 (185-213)||(24457005-24457033)
chr8 (185-213)||(39240035-39240063)
chr8 (185-213)||(40040167-40040195)
chr8 (185-213)||(44678322-44678350)
[»] chr2 (20 HSPs)
chr2 (171-213)||(17856542-17856584)
chr2 (180-213)||(37412593-37412626)
chr2 (176-213)||(39454447-39454484)
chr2 (185-213)||(4104164-4104192)
chr2 (185-213)||(4121116-4121144)
chr2 (185-213)||(5720147-5720175)
chr2 (185-213)||(12303790-12303818)
chr2 (185-213)||(16736106-16736134)
chr2 (185-213)||(18565356-18565384)
chr2 (185-213)||(27132863-27132891)
chr2 (185-213)||(27246336-27246364)
chr2 (185-213)||(28202865-28202893)
chr2 (185-213)||(28203213-28203241)
chr2 (185-213)||(31450671-31450699)
chr2 (185-213)||(32933596-32933624)
chr2 (185-213)||(32933944-32933972)
chr2 (185-213)||(34127571-34127599)
chr2 (185-213)||(34820284-34820312)
chr2 (185-213)||(41377707-41377735)
chr2 (185-213)||(44610867-44610895)
[»] chr5 (14 HSPs)
chr5 (176-213)||(36752254-36752291)
chr5 (185-213)||(3879365-3879393)
chr5 (185-213)||(7399082-7399110)
chr5 (185-213)||(8418537-8418565)
chr5 (185-213)||(18514293-18514321)
chr5 (185-213)||(19204949-19204977)
chr5 (180-212)||(20191349-20191381)
chr5 (185-213)||(28391773-28391801)
chr5 (185-213)||(29023942-29023970)
chr5 (185-213)||(33763260-33763288)
chr5 (185-213)||(35263499-35263527)
chr5 (185-213)||(39706404-39706432)
chr5 (185-213)||(40589059-40589087)
chr5 (185-213)||(40589662-40589690)
[»] scaffold0809 (2 HSPs)
scaffold0809 (185-213)||(4343-4371)
scaffold0809 (185-213)||(4671-4699)
[»] scaffold0168 (2 HSPs)
scaffold0168 (185-213)||(11493-11521)
scaffold0168 (185-213)||(11840-11868)
[»] scaffold0051 (1 HSPs)
scaffold0051 (185-213)||(40705-40733)
[»] chr7 (10 HSPs)
chr7 (185-213)||(8769287-8769315)
chr7 (185-213)||(10625437-10625465)
chr7 (185-213)||(18731024-18731052)
chr7 (185-213)||(23472909-23472937)
chr7 (185-213)||(31715974-31716002)
chr7 (185-213)||(32706737-32706765)
chr7 (185-213)||(35085744-35085772)
chr7 (185-213)||(37144116-37144144)
chr7 (185-213)||(43726595-43726623)
chr7 (185-213)||(47250899-47250927)
[»] chr6 (7 HSPs)
chr6 (185-213)||(1860838-1860866)
chr6 (166-206)||(2949620-2949659)
chr6 (185-213)||(24548246-24548274)
chr6 (185-213)||(24604880-24604908)
chr6 (185-213)||(33544827-33544855)
chr6 (185-213)||(33548132-33548160)
chr6 (185-213)||(33971933-33971961)
[»] chr4 (16 HSPs)
chr4 (185-213)||(1157208-1157236)
chr4 (185-213)||(1205730-1205758)
chr4 (185-213)||(10014470-10014498)
chr4 (185-213)||(10017820-10017848)
chr4 (185-213)||(10021611-10021639)
chr4 (185-213)||(18862794-18862822)
chr4 (185-213)||(21217852-21217880)
chr4 (185-213)||(32385164-32385192)
chr4 (185-213)||(33625869-33625897)
chr4 (185-213)||(33882302-33882330)
chr4 (185-213)||(44432977-44433005)
chr4 (185-213)||(44710408-44710436)
chr4 (185-213)||(46200489-46200517)
chr4 (185-213)||(46620932-46620960)
chr4 (185-213)||(46621280-46621308)
chr4 (185-213)||(54136096-54136124)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 53841472 - 53841379
Alignment:
Q  120 ataaagtgaatttgctggttcaaaagagtcatataagaatttcacttttttaaaagtatagacttaattgcatttttggtcccttaactattta 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  53841472 ataaagtgaatttgttggttcaaaagagtcatataagaatttcacttttataaaagtataagcttaattgcatttttggtcccttaactattta 53841379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53841602 - 53841549
Alignment:
Q  1 tcatcatcactttgtgacttgcttcaatgtagcccacagttatctttatcacaa 54  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  53841602 tcatcatcactttgtgacttgcttcaatgtagcccacatctatctttatcacaa 53841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 50819222 - 50819253
Alignment:
Q  182 cttaattgcatttttggtcccttaactattta 213  Q
    ||||||||||||||||||||||||||||||||    
T  50819222 cttaattgcatttttggtcccttaactattta 50819253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 50856642 - 50856611
Alignment:
Q  182 cttaattgcatttttggtcccttaactattta 213  Q
    ||||||||||||||||||||||||||||||||    
T  50856642 cttaattgcatttttggtcccttaactattta 50856611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 44316618 - 44316660
Alignment:
Q  171 aaaagtatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||||| || || |||||||||||||||||||||||||||||    
T  44316618 aaaagtacaggctaaattgcatttttggtcccttaactattta 44316660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 49529207 - 49529173
Alignment:
Q  179 agacttaattgcatttttggtcccttaactattta 213  Q
    ||||| |||||||||||||||||||||||||||||    
T  49529207 agactaaattgcatttttggtcccttaactattta 49529173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 4846986 - 4846949
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  4846986 tataggctaaattgcatttttggtcccttaactattta 4846949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 20963679 - 20963642
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  20963679 tataggcttaattgcctttttggtcccttaactattta 20963642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 8846081 - 8846109
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  8846081 aattgcatttttggtcccttaactattta 8846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 8846457 - 8846429
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  8846457 aattgcatttttggtcccttaactattta 8846429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 12123095 - 12123123
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  12123095 aattgcatttttggtcccttaactattta 12123123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 13867045 - 13867017
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  13867045 aattgcatttttggtcccttaactattta 13867017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 19124194 - 19124222
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  19124194 aattgcatttttggtcccttaactattta 19124222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 21918502 - 21918530
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  21918502 aattgcatttttggtcccttaactattta 21918530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 34521638 - 34521610
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34521638 aattgcatttttggtcccttaactattta 34521610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 35580330 - 35580302
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  35580330 aattgcatttttggtcccttaactattta 35580302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 35753408 - 35753436
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  35753408 aattgcatttttggtcccttaactattta 35753436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 40410717 - 40410745
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40410717 aattgcatttttggtcccttaactattta 40410745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 41208406 - 41208434
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  41208406 aattgcatttttggtcccttaactattta 41208434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 44069128 - 44069156
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  44069128 aattgcatttttggtcccttaactattta 44069156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 45871702 - 45871730
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  45871702 aattgcatttttggtcccttaactattta 45871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 54107674 - 54107702
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  54107674 aattgcatttttggtcccttaactattta 54107702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 51692259 - 51692223
Alignment:
Q  177 atagacttaattgcatttttggtcccttaactattta 213  Q
    ||||||| |||||||||||||||||||||||||||||    
T  51692259 atagactaaattgcatttttggtcccttaactattta 51692223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 5117989 - 5118026
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  5117989 tatagactaaattgtatttttggtcccttaactattta 5118026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 11395046 - 11395013
Alignment:
Q  180 gacttaattgcatttttggtcccttaactattta 213  Q
    |||| |||||||||||||||||||||||||||||    
T  11395046 gactaaattgcatttttggtcccttaactattta 11395013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 9881557 - 9881585
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  9881557 aattgcatttttggtcccttaactattta 9881585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 10923744 - 10923716
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  10923744 aattgcatttttggtcccttaactattta 10923716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 14118535 - 14118563
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  14118535 aattgcatttttggtcccttaactattta 14118563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 16267720 - 16267748
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  16267720 aattgcatttttggtcccttaactattta 16267748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 16268070 - 16268042
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  16268070 aattgcatttttggtcccttaactattta 16268042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 18794074 - 18794046
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18794074 aattgcatttttggtcccttaactattta 18794046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 19269365 - 19269393
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  19269365 aattgcatttttggtcccttaactattta 19269393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 19986503 - 19986475
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  19986503 aattgcatttttggtcccttaactattta 19986475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 23281391 - 23281363
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  23281391 aattgcatttttggtcccttaactattta 23281363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 25088021 - 25088049
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  25088021 aattgcatttttggtcccttaactattta 25088049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 28112726 - 28112754
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  28112726 aattgcatttttggtcccttaactattta 28112754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 30293393 - 30293365
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  30293393 aattgcatttttggtcccttaactattta 30293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 30611225 - 30611253
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  30611225 aattgcatttttggtcccttaactattta 30611253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 32563964 - 32563992
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  32563964 aattgcatttttggtcccttaactattta 32563992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 33753230 - 33753258
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33753230 aattgcatttttggtcccttaactattta 33753258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 34028726 - 34028754
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34028726 aattgcatttttggtcccttaactattta 34028754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 34029102 - 34029074
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34029102 aattgcatttttggtcccttaactattta 34029074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 34279622 - 34279594
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34279622 aattgcatttttggtcccttaactattta 34279594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 40703246 - 40703218
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40703246 aattgcatttttggtcccttaactattta 40703218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 42607527 - 42607555
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  42607527 aattgcatttttggtcccttaactattta 42607555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 45305790 - 45305762
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  45305790 aattgcatttttggtcccttaactattta 45305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 50921065 - 50921093
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  50921065 aattgcatttttggtcccttaactattta 50921093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 51691879 - 51691907
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  51691879 aattgcatttttggtcccttaactattta 51691907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 14920799 - 14920764
Alignment:
Q  178 tagacttaattgcatttttggtcccttaactattta 213  Q
    |||||| |||||||||||||||||||||||||||||    
T  14920799 tagactgaattgcatttttggtcccttaactattta 14920764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 37393865 - 37393830
Alignment:
Q  178 tagacttaattgcatttttggtcccttaactattta 213  Q
    |||||| |||||||||||||||||||||||||||||    
T  37393865 tagactaaattgcatttttggtcccttaactattta 37393830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 7042014 - 7041977
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  7042014 tataggctaaattgcatttttggtcccttaactattta 7041977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 30872779 - 30872816
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  30872779 tataggctaaattgcatttttggtcccttaactattta 30872816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 35224157 - 35224120
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  35224157 tataggctaaattgcatttttggtcccttaactattta 35224120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 119122 - 119150
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  119122 aattgcatttttggtcccttaactattta 119150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 6843500 - 6843528
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  6843500 aattgcatttttggtcccttaactattta 6843528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 8654317 - 8654289
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  8654317 aattgcatttttggtcccttaactattta 8654289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 9495404 - 9495376
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  9495404 aattgcatttttggtcccttaactattta 9495376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 11198586 - 11198558
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  11198586 aattgcatttttggtcccttaactattta 11198558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 16645929 - 16645901
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  16645929 aattgcatttttggtcccttaactattta 16645901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 18018167 - 18018139
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18018167 aattgcatttttggtcccttaactattta 18018139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 24456739 - 24456767
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  24456739 aattgcatttttggtcccttaactattta 24456767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 24457033 - 24457005
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  24457033 aattgcatttttggtcccttaactattta 24457005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 39240035 - 39240063
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  39240035 aattgcatttttggtcccttaactattta 39240063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 40040167 - 40040195
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40040167 aattgcatttttggtcccttaactattta 40040195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 44678322 - 44678350
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  44678322 aattgcatttttggtcccttaactattta 44678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 17856584 - 17856542
Alignment:
Q  171 aaaagtatagacttaattgcatttttggtcccttaactattta 213  Q
    |||| ||||| || |||||||||||||||||||||||||||||    
T  17856584 aaaattataggctaaattgcatttttggtcccttaactattta 17856542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 37412593 - 37412626
Alignment:
Q  180 gacttaattgcatttttggtcccttaactattta 213  Q
    |||| |||||||||||||||||||||||||||||    
T  37412593 gactaaattgcatttttggtcccttaactattta 37412626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 39454447 - 39454484
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  39454447 tataggctaaattgcatttttggtcccttaactattta 39454484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 4104164 - 4104192
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  4104164 aattgcatttttggtcccttaactattta 4104192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 4121144 - 4121116
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  4121144 aattgcatttttggtcccttaactattta 4121116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 5720147 - 5720175
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  5720147 aattgcatttttggtcccttaactattta 5720175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 12303790 - 12303818
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  12303790 aattgcatttttggtcccttaactattta 12303818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 16736106 - 16736134
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  16736106 aattgcatttttggtcccttaactattta 16736134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 18565384 - 18565356
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18565384 aattgcatttttggtcccttaactattta 18565356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 27132891 - 27132863
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  27132891 aattgcatttttggtcccttaactattta 27132863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 27246364 - 27246336
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  27246364 aattgcatttttggtcccttaactattta 27246336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 28202865 - 28202893
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  28202865 aattgcatttttggtcccttaactattta 28202893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 28203241 - 28203213
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  28203241 aattgcatttttggtcccttaactattta 28203213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 31450671 - 31450699
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  31450671 aattgcatttttggtcccttaactattta 31450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 32933596 - 32933624
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  32933596 aattgcatttttggtcccttaactattta 32933624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 32933972 - 32933944
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  32933972 aattgcatttttggtcccttaactattta 32933944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 34127571 - 34127599
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34127571 aattgcatttttggtcccttaactattta 34127599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 34820284 - 34820312
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  34820284 aattgcatttttggtcccttaactattta 34820312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 41377735 - 41377707
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  41377735 aattgcatttttggtcccttaactattta 41377707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 44610867 - 44610895
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  44610867 aattgcatttttggtcccttaactattta 44610895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 36752291 - 36752254
Alignment:
Q  176 tatagacttaattgcatttttggtcccttaactattta 213  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36752291 tataggctaaattgcatttttggtcccttaactattta 36752254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 3879393 - 3879365
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  3879393 aattgcatttttggtcccttaactattta 3879365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 7399082 - 7399110
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  7399082 aattgcatttttggtcccttaactattta 7399110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 8418565 - 8418537
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  8418565 aattgcatttttggtcccttaactattta 8418537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 18514293 - 18514321
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18514293 aattgcatttttggtcccttaactattta 18514321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 19204949 - 19204977
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  19204949 aattgcatttttggtcccttaactattta 19204977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 20191381 - 20191349
Alignment:
Q  180 gacttaattgcatttttggtcccttaactattt 212  Q
    |||| ||||||||||||||||||||||||||||    
T  20191381 gactaaattgcatttttggtcccttaactattt 20191349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 28391773 - 28391801
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  28391773 aattgcatttttggtcccttaactattta 28391801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 29023942 - 29023970
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  29023942 aattgcatttttggtcccttaactattta 29023970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 33763288 - 33763260
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33763288 aattgcatttttggtcccttaactattta 33763260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 35263499 - 35263527
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  35263499 aattgcatttttggtcccttaactattta 35263527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 39706432 - 39706404
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  39706432 aattgcatttttggtcccttaactattta 39706404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 40589059 - 40589087
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40589059 aattgcatttttggtcccttaactattta 40589087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 40589662 - 40589690
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40589662 aattgcatttttggtcccttaactattta 40589690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 4343 - 4371
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  4343 aattgcatttttggtcccttaactattta 4371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 4699 - 4671
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  4699 aattgcatttttggtcccttaactattta 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 11493 - 11521
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  11493 aattgcatttttggtcccttaactattta 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 11868 - 11840
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  11868 aattgcatttttggtcccttaactattta 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 40733 - 40705
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  40733 aattgcatttttggtcccttaactattta 40705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 8769287 - 8769315
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  8769287 aattgcatttttggtcccttaactattta 8769315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 10625465 - 10625437
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  10625465 aattgcatttttggtcccttaactattta 10625437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 18731024 - 18731052
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18731024 aattgcatttttggtcccttaactattta 18731052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 23472937 - 23472909
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  23472937 aattgcatttttggtcccttaactattta 23472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 31716002 - 31715974
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  31716002 aattgcatttttggtcccttaactattta 31715974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 32706737 - 32706765
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  32706737 aattgcatttttggtcccttaactattta 32706765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 35085744 - 35085772
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  35085744 aattgcatttttggtcccttaactattta 35085772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 37144144 - 37144116
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  37144144 aattgcatttttggtcccttaactattta 37144116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 43726623 - 43726595
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  43726623 aattgcatttttggtcccttaactattta 43726595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 47250927 - 47250899
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  47250927 aattgcatttttggtcccttaactattta 47250899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 1860866 - 1860838
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  1860866 aattgcatttttggtcccttaactattta 1860838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 2949659 - 2949620
Alignment:
Q  166 tttttaaaagtatagacttaattgcatttttggtcccttaa 206  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  2949659 tttttaaaa-tatagactaaattgcatttttggtcccttaa 2949620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 24548246 - 24548274
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  24548246 aattgcatttttggtcccttaactattta 24548274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 24604880 - 24604908
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  24604880 aattgcatttttggtcccttaactattta 24604908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 33544827 - 33544855
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33544827 aattgcatttttggtcccttaactattta 33544855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 33548132 - 33548160
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33548132 aattgcatttttggtcccttaactattta 33548160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 33971933 - 33971961
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33971933 aattgcatttttggtcccttaactattta 33971961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 1157208 - 1157236
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  1157208 aattgcatttttggtcccttaactattta 1157236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 1205758 - 1205730
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  1205758 aattgcatttttggtcccttaactattta 1205730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 10014470 - 10014498
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  10014470 aattgcatttttggtcccttaactattta 10014498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 10017820 - 10017848
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  10017820 aattgcatttttggtcccttaactattta 10017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 10021611 - 10021639
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  10021611 aattgcatttttggtcccttaactattta 10021639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 18862822 - 18862794
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  18862822 aattgcatttttggtcccttaactattta 18862794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 21217852 - 21217880
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  21217852 aattgcatttttggtcccttaactattta 21217880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 32385192 - 32385164
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  32385192 aattgcatttttggtcccttaactattta 32385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 33625869 - 33625897
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33625869 aattgcatttttggtcccttaactattta 33625897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 33882330 - 33882302
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  33882330 aattgcatttttggtcccttaactattta 33882302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 44433005 - 44432977
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  44433005 aattgcatttttggtcccttaactattta 44432977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 44710408 - 44710436
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  44710408 aattgcatttttggtcccttaactattta 44710436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 46200489 - 46200517
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  46200489 aattgcatttttggtcccttaactattta 46200517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 46620932 - 46620960
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  46620932 aattgcatttttggtcccttaactattta 46620960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 46621308 - 46621280
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  46621308 aattgcatttttggtcccttaactattta 46621280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 54136096 - 54136124
Alignment:
Q  185 aattgcatttttggtcccttaactattta 213  Q
    |||||||||||||||||||||||||||||    
T  54136096 aattgcatttttggtcccttaactattta 54136124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University