View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4122_high_2 (Length: 412)

Name: NF4122_high_2
Description: NF4122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4122_high_2
NF4122_high_2
[»] chr7 (1 HSPs)
chr7 (38-412)||(26156755-26157129)
[»] chr6 (2 HSPs)
chr6 (193-404)||(10357360-10357571)
chr6 (64-169)||(10106168-10106258)
[»] scaffold1610 (1 HSPs)
scaffold1610 (193-402)||(571-782)
[»] scaffold1605 (1 HSPs)
scaffold1605 (193-402)||(797-1008)
[»] chr1 (1 HSPs)
chr1 (193-402)||(20443338-20443549)
[»] chr5 (2 HSPs)
chr5 (255-404)||(19109939-19110088)
chr5 (324-389)||(10430415-10430480)
[»] chr3 (3 HSPs)
chr3 (327-404)||(47327739-47327816)
chr3 (356-399)||(44656902-44656945)
chr3 (327-404)||(22350427-22350504)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 38 - 412
Target Start/End: Complemental strand, 26157129 - 26156755
Alignment:
Q  38 cagatagcagggaacagaaaaaaccttacctctgctgctgccaactgccgaaaccagcagcaccacactgcagctgttcacgcagcttccgagcagcaga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  26157129 cagatagcagggaacagaaaaaaccttacctctgctgctgccaactgccgaaaccagcagcaccacacagctgctgttcacgcagcttccgagcagcaga 26157030  T
Q  138 acagaccccaaaatattccaagcgacgaaacaactcgaaaacagcccccacacccttaccttctcaagcactcttccagataccattgccattcgtaaag 237  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26157029 acagacaccaaaatattccaagcgacgaaacacctcgaaaacagcccccacacccttaccttctcaagcactcctccagataccattgccattcgtaaag 26156930  T
Q  238 aaaacaagccggaaaacccgttctactcaaaagccaccttcacgaaagtagttgaatctcttcaactagatcgtcaactcctttaccaccaccattgaaa 337  Q
     ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26156929 caaacaagccggaaaatccgttctactcaaaagccacctccacgaaagtagttgaatctcttcaactagatcgtcaactcctttaccaccaccagtgaaa 26156830  T
Q  338 acacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcctaaccttc 412  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26156829 acacgatcatttcgtgctttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcctaaccttc 26156755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 193 - 404
Target Start/End: Original strand, 10357360 - 10357571
Alignment:
Q  193 ttaccttctcaagcactcttccagataccattgccattcgtaaagaaaacaagccggaaaacccgttctactcaaaagccaccttcacgaaagtagttga 292  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||| |  | ||||||||  ||| ||||||||| |||||||||||||||| | || | ||||    
T  10357360 ttaccttctcaaacactcctccggataccactgccattcgtacaacatacaagccgagaaatccgttctacccaaaagccaccttcacaagagaacttga 10357459  T
Q  293 atctcttcaactagatcgtcaactcctttaccaccaccattgaaaacacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaatc 392  Q
    ||||||||||||||||| || |||||||||||||   | ||||| |||| ||| ||  | |||||||| |||| |||||| |||||||||||||||||||    
T  10357460 atctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattctgagctttccacataacccatatagccgcttgccaaatcaatc 10357559  T
Q  393 tccaccctttcc 404  Q
    ||||||||||||    
T  10357560 tccaccctttcc 10357571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 10106258 - 10106168
Alignment:
Q  64 tacctctgctgctgccaactgccgaaaccagcagcaccacactgcagctgttcacgcagcttccgagcagcagaacagaccccaaaatattccaagcgac 163  Q
    ||||||||||||||||||||||||||||||||| ||||||||               ||||||||| |||||||||||||| || |||||||||||||||    
T  10106258 tacctctgctgctgccaactgccgaaaccagcaacaccacac---------------agcttccgaacagcagaacagacctcacaatattccaagcgac 10106174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1610 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1610
Description:

Target: scaffold1610; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 402
Target Start/End: Original strand, 571 - 782
Alignment:
Q  193 ttaccttctcaagcactcttccagataccattgccattcgtaaagaaaacaagccggaaaacccgttctactcaaaagccaccttcacgaaagtagttga 292  Q
    |||||||||||| ||||||| | | |||| |||||||||||| |  ||||| |  |||||| |||||||| || |||||||||| |||||||| | ||||    
T  571 ttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacgaaagaacttga 670  T
Q  293 atctcttcaactagatcgtcaactcctttaccaccaccattgaaa--acacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaa 390  Q
    ||||||||||| || || || || |||||    |||   ||||||  |||||||| ||||| || |||||||| | | | ||||||||||||||||||||    
T  671 atctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgcttgccaaatcaa 770  T
Q  391 tctccacccttt 402  Q
     |||||||||||    
T  771 actccacccttt 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1605 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1605
Description:

Target: scaffold1605; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 402
Target Start/End: Complemental strand, 1008 - 797
Alignment:
Q  193 ttaccttctcaagcactcttccagataccattgccattcgtaaagaaaacaagccggaaaacccgttctactcaaaagccaccttcacgaaagtagttga 292  Q
    |||||||||||| ||||||| | | |||| |||||||||||| |  ||||| |  |||||| |||||||| || |||||||||| |||||||| | ||||    
T  1008 ttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacgaaagaacttga 909  T
Q  293 atctcttcaactagatcgtcaactcctttaccaccaccattgaaa--acacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaa 390  Q
    ||||||||||| || || || || |||||    |||   ||||||  |||||||| ||||| || |||||||| | | | ||||||||||||||||||||    
T  908 atctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgcttgccaaatcaa 809  T
Q  391 tctccacccttt 402  Q
     |||||||||||    
T  808 actccacccttt 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 402
Target Start/End: Complemental strand, 20443549 - 20443338
Alignment:
Q  193 ttaccttctcaagcactcttccagataccattgccattcgtaaagaaaacaagccggaaaacccgttctactcaaaagccaccttcacgaaagtagttga 292  Q
    |||||||||||| ||||||| | | |||| |||||||||||| |  ||||| |  |||||| |||||||| || |||||||||| |||||||| | ||||    
T  20443549 ttaccttctcaaacactctttcgggtacccttgccattcgtataacaaacacggtggaaaatccgttctattctaaagccacctccacgaaagaacttga 20443450  T
Q  293 atctcttcaactagatcgtcaactcctttaccaccaccattgaaa--acacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaa 390  Q
    ||||||||||| || || || || |||||    |||   ||||||  |||||||| ||||| || |||||||| | | | ||||||||||||||||||||    
T  20443449 atctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatcacctaaatcgccgcttgccaaatcaa 20443350  T
Q  391 tctccacccttt 402  Q
     |||||||||||    
T  20443349 actccacccttt 20443338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 404
Target Start/End: Original strand, 19109939 - 19110088
Alignment:
Q  255 ccgttctactcaaaagccaccttcacgaaagtagttgaatctcttcaactagatcgtcaactcctttaccaccaccattgaaaacacaatcgtttcgtgc 354  Q
    ||||||||| ||||| |||||| |||||||  | |||||||||||| | |||||| || |  | |||| |  ||   ||||||| || ||||||||  ||    
T  19109939 ccgttctacacaaaaaccacctccacgaaatcacttgaatctcttctaatagatcatccatgcttttaacgacattgttgaaaatacgatcgtttctagc 19110038  T
Q  355 tttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcc 404  Q
    |||||| |||| ||| || |||||||||||||||| |||||| |||||||    
T  19110039 tttccacataacccaaattgccgcttgccaaatcattctccaacctttcc 19110088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 10430480 - 10430415
Alignment:
Q  324 caccaccattgaaaacacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatca 389  Q
    |||||||||||||||||||||| || |  |||||||||||   ||| || ||||||||||||||||    
T  10430480 caccaccattgaaaacacaatcattccaagctttccaaattgaccaaattgccgcttgccaaatca 10430415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 47327816 - 47327739
Alignment:
Q  327 caccattgaaaacacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcc 404  Q
    ||||||| |||| |||||| ||| | |||||||||||| |||| || |||||||||||||||| |||| |||| ||||    
T  47327816 caccattaaaaatacaatcattttgagctttccaaatactccaaattgccgcttgccaaatcattctcaaccccttcc 47327739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 44656902 - 44656945
Alignment:
Q  356 ttccaaataatccatatcgccgcttgccaaatcaatctccaccc 399  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||    
T  44656902 ttccaaataatccaaatcgccgcttgccaaatcattctcaaccc 44656945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 22350504 - 22350427
Alignment:
Q  327 caccattgaaaacacaatcgtttcgtgctttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcc 404  Q
    ||||||| |||| |||||| || || ||||| |||||| |||| || |||||||||||||||| |||| |||| ||||    
T  22350504 caccattaaaaatacaatcattccgagcttttcaaatactccaaattgccgcttgccaaatcattctcaaccccttcc 22350427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University