View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4123_high_13 (Length: 205)
Name: NF4123_high_13
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 45035025 - 45034821
Alignment:
| Q |
1 |
tagggaaattcaccaatttgaatttgaaatgtaaggaaacatacacaatttattctcactagattgtaatgcctaagtaaaatgggtgtaaactagcaaa |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45035025 |
tagggaaattcaccaatttgagtttgaaatgtaaggaaacatacacaatttattctcactagattgtaatgcctaagtaaaatgggtgtaaactagcaaa |
45034926 |
T |
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| Q |
101 |
aaacaaagactgatagtaaatgctgaggaagccaagctgaagcccaacaaagatgaggtccaagccaaaaaagagaatgtgtgagaaagcttgaggctct |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45034925 |
aaacaaagaccgatagtaaatgctgaggaagccaagctaaagcccaacaaagatgaggtccaagccaaaaaagagaatgtgtgagaaagcttaaggctct |
45034826 |
T |
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| Q |
201 |
gtgct |
205 |
Q |
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||||| |
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| T |
45034825 |
gtgct |
45034821 |
T |
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Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 35673544 - 35673708
Alignment:
| Q |
3 |
gggaaattcaccaatttgaatttgaaatgtaaggaaacatacacaatttattctcactagattgtaatgcctaagtaaaatgggtgtaaactagcaaaaa |
102 |
Q |
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|||||||| |||||||||| ||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
35673544 |
gggaaatttaccaatttgagtttgaaatgcaaggacacataca--atttattctcactatattgtaatgactaagtaaaatgggtgtaaactagcaaaa- |
35673640 |
T |
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| Q |
103 |
acaaagactgatagtaaatgctgaggaagccaagctgaagcccaacaaagatgaggtccaagccaaaa |
170 |
Q |
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||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
35673641 |
acaaagactaatagtaaatgacgaggaagccaaactgaagcccaacaaagacgaggtccaagccaaaa |
35673708 |
T |
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