View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4123_high_3 (Length: 444)
Name: NF4123_high_3
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 34861633 - 34862061
Alignment:
| Q |
16 |
aagagaaattctgaaaagaatggaacatatggagccctcgtattcccaagatttgagatattccttttatttctagcactgcctggtatttgcaaggcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34861633 |
aagagaaattctgaaaagaatggaacatatggagccctcgtattcccaagatttgagatattccttttatttctagcactgcctggtatttgcaaggcct |
34861732 |
T |
|
| Q |
116 |
ctactggtcttatcagaggtaatttaattcaatgttattatttgctatgaagcaccccctcctagacatgtacacttgacacgacaccgagactctccca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34861733 |
ctactggtcttatcagaggtaatttaattcaatgttattatttgctatgaagcaccccctcctagacatgtacacttgacacgacaccgagactctccca |
34861832 |
T |
|
| Q |
216 |
gatatgccctcaatccgaattattggtgctacgttgattatttgacaccttaccaatgttaccattaccatacaatctgtacaaactgttccaaaccatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34861833 |
gatatgccctcaatccgaattattggtgctacgttgattatttgacaccttaccaatgttaccattaccatacaatctgtacaaactgttccaaaccatt |
34861932 |
T |
|
| Q |
316 |
agtgtggtgaatctgtacaaacaaatcattaggcttaatttttcctatttatatgcatggccacaggaggagcacctgcagcaatggcagttggaattat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34861933 |
agtgtggtgaatctgtacaaacaaatcattaggcttaatttttcctatttatttgcatggccacaggaggagcacctgcagcaatggcagttggaattat |
34862032 |
T |
|
| Q |
416 |
actattgatttttgtgtccactgtgcttc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34862033 |
actattgatttttgtgtccactgtgcttc |
34862061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University