View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4123_high_6 (Length: 333)
Name: NF4123_high_6
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 49293340 - 49293650
Alignment:
| Q |
18 |
tgttcatgaggaaccactagttaatccaaccaagccgctctagtagcaatgacaacacgtcttttatattaaacatcagacagacatgggatatgttata |
117 |
Q |
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| T |
49293340 |
tgtttatgaggaaccactagttaatccaaccaagccgctctagtagcaatgacaacacgtcttttatattagacatcagacagacatgggatatgttaca |
49293439 |
T |
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| Q |
118 |
tcatgtatgagatctctcaacaattttttgatattgttaaacccatgattcttaacgaagtttaacaagggaaggagtttgaggctagatgagccaaaaa |
217 |
Q |
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| T |
49293440 |
tcatgtatgagatctctcaacaattttttgatattgttaaacccatgattcttaacgaagtttaacaagtcaaggagtttgaggctagatgagccaaaaa |
49293539 |
T |
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| Q |
218 |
cgttatcctatgttacgggagatataaatatatacaaaaagaaactcgattcatgttttaaatatagtagatttattatt-----atttgttctcctctc |
312 |
Q |
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| T |
49293540 |
cgttatcctatgttacgggagatataa--atatacaaaaagaaactcgattcatgttttaaatatagtagatttattattatttaatttgttctcctctc |
49293637 |
T |
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| Q |
313 |
tgctaagtattat |
325 |
Q |
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| T |
49293638 |
tgctaagtattat |
49293650 |
T |
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