View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4123_high_9 (Length: 300)

Name: NF4123_high_9
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4123_high_9
NF4123_high_9
[»] chr8 (10 HSPs)
chr8 (15-300)||(42456840-42457125)
chr8 (144-208)||(16677120-16677184)
chr8 (138-230)||(40832890-40832982)
chr8 (157-299)||(5920781-5920923)
chr8 (148-233)||(9780358-9780443)
chr8 (264-296)||(44327489-44327521)
chr8 (193-284)||(31645145-31645236)
chr8 (249-300)||(41581139-41581190)
chr8 (139-205)||(38753823-38753889)
chr8 (172-208)||(38137459-38137495)
[»] chr3 (9 HSPs)
chr3 (139-284)||(39028104-39028249)
chr3 (139-300)||(51380940-51381097)
chr3 (144-300)||(54524927-54525083)
chr3 (139-205)||(35442657-35442723)
chr3 (139-206)||(48723331-48723398)
chr3 (147-300)||(31984378-31984529)
chr3 (165-243)||(29570344-29570422)
chr3 (172-253)||(2395836-2395918)
chr3 (172-298)||(27844615-27844741)
[»] chr2 (13 HSPs)
chr2 (139-299)||(5357563-5357723)
chr2 (139-300)||(27249753-27249914)
chr2 (139-299)||(11915384-11915544)
chr2 (171-288)||(29923867-29923984)
chr2 (139-300)||(25271727-25271888)
chr2 (148-208)||(29699587-29699647)
chr2 (148-203)||(12037297-12037352)
chr2 (171-244)||(4964113-4964186)
chr2 (239-295)||(29699525-29699581)
chr2 (173-244)||(29927731-29927802)
chr2 (148-202)||(42013368-42013422)
chr2 (172-244)||(14389319-14389392)
chr2 (220-276)||(12037358-12037414)
[»] chr7 (4 HSPs)
chr7 (139-299)||(2729800-2729955)
chr7 (143-212)||(5897644-5897713)
chr7 (186-244)||(24972945-24973003)
chr7 (148-236)||(6687764-6687853)
[»] chr4 (9 HSPs)
chr4 (142-291)||(21512002-21512151)
chr4 (139-300)||(24699361-24699522)
chr4 (139-299)||(18489601-18489760)
chr4 (137-288)||(43148843-43148992)
chr4 (137-295)||(9672094-9672252)
chr4 (171-288)||(45073216-45073330)
chr4 (139-204)||(12868411-12868476)
chr4 (172-237)||(55583740-55583806)
chr4 (138-198)||(28752839-28752899)
[»] chr5 (3 HSPs)
chr5 (139-300)||(9379188-9379349)
chr5 (143-273)||(10315699-10315829)
chr5 (138-197)||(37283757-37283816)
[»] chr1 (7 HSPs)
chr1 (144-276)||(22023123-22023256)
chr1 (139-299)||(68906-69064)
chr1 (139-215)||(28108100-28108176)
chr1 (220-296)||(36979751-36979827)
chr1 (137-196)||(46916026-46916085)
chr1 (138-198)||(25993128-25993188)
chr1 (150-232)||(46878155-46878237)
[»] chr6 (10 HSPs)
chr6 (137-298)||(33629342-33629502)
chr6 (137-296)||(27176942-27177101)
chr6 (138-291)||(21610998-21611151)
chr6 (140-299)||(2285575-2285734)
chr6 (138-201)||(20771614-20771677)
chr6 (171-244)||(33929923-33929996)
chr6 (138-206)||(3445453-3445521)
chr6 (179-297)||(10498118-10498236)
chr6 (156-300)||(33900112-33900249)
chr6 (173-245)||(34205927-34205999)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 42457125 - 42456840
Alignment:
Q  15 aagacaatgttattgcggacattgatgttgttgggttgagtaacattgggtccaatgataaagacaatattgttgggctaaatgacattgagcccaataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42457125 aagacaatgttattgcggacattgatgttgttgggttgagtaacattgggtccaatgataaagacaatattgttgggctaaatgacattgagcccaataa 42457026  T
Q  115 aagaggcgaaggggtaaggaacaagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagc 214  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42457025 aaggggcgaaggggtaaggaacaagaagaatgttgttcacacttcacttaatgctaggaaacaccagtaatttaccaatataacctcatcggtaattagc 42456926  T
Q  215 tgttgatggattttaaccggcggtagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||| |||||||| ||  ||||||||||||||||||||||    
T  42456925 tgttgatggattttaaccgacggtagttaattgtcgatggacaattacgtctttttctgatgtatttcagccttgttagaagtgta 42456840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 16677184 - 16677120
Alignment:
Q  144 atgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggta 208  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||    
T  16677184 atgttgttcacacttcactcaatgctaggaaacaccagtaatttacctacataacctcatcggta 16677120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 40832890 - 40832982
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaa 230  Q
    |||| ||| |||||||||||||||| |||  ||| ||| || ||||||||||||||||||||||||||||| ||| |||| |||| |||||||    
T  40832890 agaataatattgttcacacttcactaaatattaggaaatactagtaatttaccaatataacctcatcggtagttacctgtcgatgaattttaa 40832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 5920923 - 5920781
Alignment:
Q  157 ttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggac 256  Q
    |||||| |||||||| ||||||||||| ||||||||||||| |||||||| | ||| ||   |||  |||||||| |||   | ||||   || || |||    
T  5920923 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcggcagttaacttccgatatattttaactggcaacaattaacggccaatagac 5920824  T
Q  257 aattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    | ||||||||||||||| || |||| |||||||||||||||||    
T  5920823 atttacgtatttttctgctgtgttttagccttgttagaagtgt 5920781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 9780358 - 9780443
Alignment:
Q  148 tgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccg 233  Q
    ||||||||||||||| |||||||||||| |  ||||||||| ||||||||| |||||| || ||| |||  |||| ||||||||||    
T  9780358 tgttcacacttcactcaatgctagaaaatataagtaatttatcaatataacatcatcgatagttaactgccgatgaattttaaccg 9780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 44327521 - 44327489
Alignment:
Q  264 tatttttctggtgcgtttcagccttgttagaag 296  Q
    |||||||||||||||||||||||||||||||||    
T  44327521 tatttttctggtgcgtttcagccttgttagaag 44327489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 31645145 - 31645236
Alignment:
Q  193 tataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggacaattacgtatttttctggtgcgtttcag 284  Q
    |||||||||||||| | ||| |||  ||||||||||||||| ||| |||||| | ||||||| || |||| |  |||||||||| |||||||    
T  31645145 tataacctcatcggcacttaactgccgatggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 300
Target Start/End: Original strand, 41581139 - 41581190
Alignment:
Q  249 cgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    ||||||||| |||||| ||||||| ||| |||||||||||||| ||||||||    
T  41581139 cgatggacatttacgtctttttctagtgtgtttcagccttgtttgaagtgta 41581190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 38753889 - 38753823
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcg 205  Q
    ||||||||||| |||||||| ||| |||||||  |||||  ||||||||| ||||||||||| ||||    
T  38753889 gaagaatgttgctcacacttgactcaatgctaagaaacattagtaatttatcaatataaccttatcg 38753823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 38137459 - 38137495
Alignment:
Q  172 aaaacaccagtaatttaccaatataacctcatcggta 208  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  38137459 aaaataccagtaatttacaaatataacctcatcggta 38137495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 39028104 - 39028249
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||| ||||| ||||| |||| |||| ||||||||||||||     
T  39028104 gaagaatgttgttcacacttcaatcaatgctagaaaacactagtaatttacaaatataaccttatcggcaattaactgtcgatgaattttaaccggcggc 39028203  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcag 284  Q
    |||||| | |||||| ||| |||||| ||||||||||| |||||||    
T  39028204 agttaactgccgatgaacatttacgtctttttctggtgtgtttcag 39028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 51380940 - 51381097
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||| ||||||||| ||| | || ||||||||||||| |||||     
T  51380940 gaagaatgttgttcacacttcactcaatgctaggaaacactagtaatttatcaatataacatcatcggtagttaacagtcgatggattttaactggcggc 51381039  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    ||||||    | |||| |  |||||| ||||||||||| |||||||||||||| ||||||||    
T  51381040 agttaa----ctatgggcgtttacgtctttttctggtgtgtttcagccttgtttgaagtgta 51381097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 300
Target Start/End: Original strand, 54524927 - 54525083
Alignment:
Q  144 atgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagtta 243  Q
    ||||||||||||||||||| |||| ||| ||| || ||| |||||| |||||||||||||||| | ||| ||||||||||| |||||||||||| |||||    
T  54524927 atgttgttcacacttcactcaatgttaggaaatactagttatttactaatataacctcatcggcagttaactgttgatggaatttaaccggcggcagtta 54525026  T
Q  244 atttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    | | || || |||| |||||  ||||||||||| ||||||||||| |||||||||||    
T  54525027 actgccaatagacatttacgattttttctggtgtgtttcagccttcttagaagtgta 54525083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 35442657 - 35442723
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcg 205  Q
    |||||||||||||||||||||||| |||||||||||||||   |||||||||||| |||||||||||    
T  35442657 gaagaatgttgttcacacttcactcaatgctagaaaacactgataatttaccaatgtaacctcatcg 35442723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 48723331 - 48723398
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcgg 206  Q
    |||||||||||||||||||||||| |||||||  ||||||  ||||||||||||||||| ||||||||    
T  48723331 gaagaatgttgttcacacttcactcaatgctatgaaacactggtaatttaccaatataatctcatcgg 48723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 300
Target Start/End: Complemental strand, 31984529 - 31984378
Alignment:
Q  147 ttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatt 246  Q
    ||||||| |||||||| |||||||| |||||||| |||||||| |||||||| |||| || | ||| | |  |||| |||||||||||||| |||||| |    
T  31984529 ttgttcaaacttcactcaatgctaggaaacacca-taatttacaaatataacatcataggcagttaaccgccgatgaattttaaccggcggcagttaact 31984431  T
Q  247 tccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
     | |||||||| ||| || ||||||||||   ||||| ||||||| ||||||||    
T  31984430 gctgatggacatttatgt-tttttctggtatatttcaaccttgtttgaagtgta 31984378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 29570344 - 29570422
Alignment:
Q  165 atgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagtta 243  Q
    ||||| |||||||||  |||  |||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||||||    
T  29570344 atgctggaaaacacctctaaaataccaaaataacctcatcggcagttaactgctgatggattttaaccggcggtagtta 29570422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 2395918 - 2395836
Alignment:
Q  172 aaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatgga-ttttaaccggcggtagttaatttccgatg 253  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||| |||  |||||| ||||||||||||  |||||| | ||||||    
T  2395918 aaaacacaagttatttaccaatatagcctcatcggtagttaactgccgatggatttttaaccggcgacagttaactgccgatg 2395836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 298
Target Start/End: Complemental strand, 27844741 - 27844615
Alignment:
Q  172 aaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggacaattacgtatttttc 271  Q
    |||||| |||||||||| ||||||||  ||||||| | ||| ||   |||| |||||||||| ||| |||||| |   |||||| | |||||||||||||    
T  27844741 aaaacatcagtaatttatcaatataatttcatcggcagttaactaccgatgaattttaaccgacggcagttaactgtagatggatatttacgtatttttc 27844642  T
Q  272 tggtgcgtttcagccttgttagaagtg 298  Q
    | |||  ||||| ||||||||| ||||    
T  27844641 ttgtgtatttcaaccttgttaggagtg 27844615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 5357723 - 5357563
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||||| |||| |  ||||||| ||||||||||||||||||||||||||| | ||| |||| |||||| ||||||||||       
T  5357723 gaagaatgttgttcacacttcactcaatgttgaaaaacactagtaatttaccaatataacctcatcggcagttaactgtcgatggaatttaaccggcaac 5357624  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    |||||| |  ||||||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  5357623 agttaactgtcgatggacatttacgtctttttctagtgtgtttcagccttgttagaagtgt 5357563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 27249914 - 27249753
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||||| |||| ||| |||||| ||||||||| ||||||||| |||||   | ||| |    ||||||||||||| |||||     
T  27249914 gaagaatgttgttcacacttcactcaatgttaggaaacactagtaatttatcaatataacttcatcatcagttaaccaccgatggattttaacaggcggc 27249815  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    |||||| | |||||||||| |||| | |||||| |||| |||||||||||||| ||||||||    
T  27249814 agttaactgccgatggacatttacatctttttccggtgtgtttcagccttgtttgaagtgta 27249753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 11915544 - 11915384
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    ||||||||||||||||| |||||| |||| || ||||||| | |||||||  ||||||| || || || | |||   |||||||||||||||||||| ||    
T  11915544 gaagaatgttgttcacatttcactcaatgataaaaaacactaataatttataaatataatcttattggcagttaatcgttgatggattttaaccggcagt 11915445  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    |||||| |  ||||| ||| |||| | ||||||||||| ||||||| ||||||||||||||    
T  11915444 agttaactgtcgatgaacatttacatttttttctggtgtgtttcagtcttgttagaagtgt 11915384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 288
Target Start/End: Complemental strand, 29923984 - 29923867
Alignment:
Q  171 gaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggacaattacgtattttt 270  Q
    ||||||||||||||||||| |||||||||||||||| | |||  || |||||||||||||||||||| |||||| |  ||||  ||| ||| || |||||    
T  29923984 gaaaacaccagtaatttactaatataacctcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgataaacatttatgtcttttt 29923885  T
Q  271 ctggtgcgtttcagcctt 288  Q
    ||| || |||||||||||    
T  29923884 ctgttgtgtttcagcctt 29923867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 25271727 - 25271888
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    ||||||||||||||||||||||||  ||  |||||||||| |||||||||   ||||||| |  |||||| ||| |||  |||| ||||||| | ||||     
T  25271727 gaagaatgttgttcacacttcactcgatattagaaaacactagtaatttattcatataactttgtcggtagttaactgccgatgaattttaaacagcggc 25271826  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    ||||||   ||||| |||  |||||| |||||||| || |||||||||||||| ||||||||    
T  25271827 agttaaccgccgatagacctttacgtctttttctgatgtgtttcagccttgtttgaagtgta 25271888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 29699647 - 29699587
Alignment:
Q  148 tgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggta 208  Q
    ||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||    
T  29699647 tgttcacacttcactcaatgttaggaaacactagtaatttaccaatataacctcatcggta 29699587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 12037297 - 12037352
Alignment:
Q  148 tgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcat 203  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  12037297 tgttcacacttcactcaatgctaggaaacaccagtaatttatcaatataacctcat 12037352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 4964186 - 4964113
Alignment:
Q  171 gaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaa 244  Q
    ||||||||||||||||||| ||||||| |||||||| | ||| ||| | |||||||||||||| | ||||||||    
T  4964186 gaaaacaccagtaatttactaatataatctcatcggcagttaactgctaatggattttaaccgacagtagttaa 4964113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 29699581 - 29699525
Alignment:
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaa 295  Q
    |||||| | |||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  29699581 agttaactgccgatggacatttacgtctttttctggtgtgtttcagccttgttagaa 29699525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 29927731 - 29927802
Alignment:
Q  173 aaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaa 244  Q
    ||||||||  || ||||||||||||||||||||| | ||| ||| |||||||||||||||| || |||||||    
T  29927731 aaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggattttaaccgacgatagttaa 29927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 42013368 - 42013422
Alignment:
Q  148 tgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctca 202  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |||| ||| ||||    
T  42013368 tgttcacgcttcactcaatgctaggaaacaccagtaatttatcaatttaatctca 42013422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 14389319 - 14389392
Alignment:
Q  172 aaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatgga-ttttaaccggcggtagttaa 244  Q
    |||||||||||||||||| |||||||||||||| ||| ||| |||  ||| || ||||||||||| | ||||||    
T  14389319 aaaacaccagtaatttactaatataacctcatcagtagttaactgccgattgatttttaaccggcagcagttaa 14389392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 12037358 - 12037414
Alignment:
Q  220 atggattttaaccggcggtagttaatttccgatggacaattacgtatttttctggtg 276  Q
    |||||||||||||| |||||||||| | || ||| ||| |||||| |||||||||||    
T  12037358 atggattttaaccgacggtagttaactgccaatgaacatttacgtctttttctggtg 12037414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 2729955 - 2729800
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||||| |||||||| |||||||||||     |||||||||||||||||    ||| || | ||||||||||||| || ||     
T  2729955 gaagaatgttgttcacacttcactcaatgctaggaaacaccagta-----ccaatataacctcatcgactgttaactatcgatggattttaactggtggc 2729861  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    |||||| | |||||||||| |||||| |||||||| || ||||||||||||||||||||||    
T  2729860 agttaactgccgatggacatttacgtctttttctgttgtgtttcagccttgttagaagtgt 2729800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 5897713 - 5897644
Alignment:
Q  143 aatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaatta 212  Q
    ||||||||||||| ||||||  ||||||  |||||||||||||||| ||||||||| ||||||| |||||    
T  5897713 aatgttgttcacatttcactcgatgctaagaaacaccagtaatttatcaatataacttcatcggcaatta 5897644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 24972945 - 24973003
Alignment:
Q  186 ttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaa 244  Q
    ||||||||||||| ||||||  | ||| |||  ||||||||||||||||||||||||||    
T  24972945 ttaccaatataacatcatcgacagttaactgccgatggattttaaccggcggtagttaa 24973003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 6687853 - 6687764
Alignment:
Q  148 tgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatgga-ttttaaccggcg 236  Q
    ||||||||||||||| |||| | | ||||||||| |||||||| ||||||  ||||||| ||||| |||  |||| | ||||||||||||    
T  6687853 tgttcacacttcactcaatgatgggaaacaccagcaatttacctatataatttcatcggcaattaactgccgatgaatttttaaccggcg 6687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 21512002 - 21512151
Alignment:
Q  142 gaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagt 241  Q
    ||||||||||||||||||||| |||||||| |||||| | ||||||| ||||||||| | ||||| | ||| ||||||||  |||||||||||| | |||    
T  21512002 gaatgttgttcacacttcactcaatgctaggaaacactactaatttatcaatataactttatcggcagttaactgttgatcaattttaaccggctgcagt 21512101  T
Q  242 taatttccgatggacaattacgtatttttctggtgcgtttcagccttgtt 291  Q
    ||| | | |||||||| |||||| ||||||||||| |||||| |||||||    
T  21512102 taactgctgatggacatttacgtctttttctggtgtgtttcatccttgtt 21512151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 24699522 - 24699361
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||| ||||||||||| | ||| |||| |||||| ||||||||| ||| ||||| ||||||||| ||| |||  ||||||||||||| |||||     
T  24699522 gaagaatgttcttcacacttcaatcaattctaggaaacactagtaatttatcaacataacatcatcggtagttaactgccgatggattttaactggcggc 24699423  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    |||||| |  ||||||||| |||||| ||||||||||  |||| |||| |||| ||| ||||    
T  24699422 agttaactggcgatggacatttacgtctttttctggtatgttttagccctgtttgaattgta 24699361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 139 - 299
Target Start/End: Original strand, 18489601 - 18489760
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    ||||||||||||||| |||||||| |||| ||  |||||| ||||||||||||||||||  ||||||| | ||| ||| |||||||||||||||| |||     
T  18489601 gaagaatgttgttcatacttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcagttaactgctgatggattttaaccgacggc 18489700  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    ||||||  |  ||| |||| ||| || |||||||||||  ||||| |||||||||||||||    
T  18489701 agttaa-ctgtgatagacatttatgtctttttctggtgtatttcaaccttgttagaagtgt 18489760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 43148843 - 43148992
Alignment:
Q  137 aagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcg 236  Q
    ||||| |||||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||| | |||  ||| ||||||||| ||||| |     
T  43148843 aagaataatgttgttcacacttcagttaatgctagaaaacacca--attttaccaatataacctcatcggcagttaattgtcgatggatttcaaccgaca 43148940  T
Q  237 gtagttaatttccgatggacaattacgtatttttctggtgcgtttcagcctt 288  Q
    | |||||| | | ||  | || |||||| ||||||||||| |||||||||||    
T  43148941 gcagttaaatactgaatgtcatttacgtttttttctggtgtgtttcagcctt 43148992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 295
Target Start/End: Original strand, 9672094 - 9672252
Alignment:
Q  137 aagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcg 236  Q
    ||||||||||||||||| ||||||||||||||||| ||| |   ||||||| |||||||||| ||||||| | ||| | ||  |||||||||||||| ||    
T  9672094 aagaagaatgttgttcatacttcacttaatgctaggaaatattggtaatttcccaatataacttcatcggcagttaacagtcaatggattttaaccgacg 9672193  T
Q  237 gtagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaa 295  Q
      |||||| | ||||||| || || ||| |||||||| || |||||||| |||||||||    
T  9672194 acagttaactaccgatgggcattttcgtctttttctgatgtgtttcagcattgttagaa 9672252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 45073216 - 45073330
Alignment:
Q  171 gaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggacaattacgtattttt 270  Q
    |||||||||||||||||||||||||||||| ||||  | ||| | |   |||||||||||||||||| |||||| | |||||||||| |||| | |||||    
T  45073216 gaaaacaccagtaatttaccaatataaccttatcgacagttaaccg---atggattttaaccggcggcagttaactgccgatggacatttacatcttttt 45073312  T
Q  271 ctggtgcgtttcagcctt 288  Q
    || ||| |||||| ||||    
T  45073313 ctagtgtgtttcaacctt 45073330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 12868411 - 12868476
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatc 204  Q
    |||||||||||||||||||||||| |||| |||||||||  ||||||||| |||||||| ||||||    
T  12868411 gaagaatgttgttcacacttcactcaatgttagaaaacattagtaatttatcaatataatctcatc 12868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 55583740 - 55583806
Alignment:
Q  172 aaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatgga-ttttaaccggcgg 237  Q
    |||||| ||||||||||||||||||||| ||| |||| |||  |||||||||| |||||||||||||    
T  55583740 aaaacatcagtaatttaccaatataaccccattggtagttaattgttgatggatttttaaccggcgg 55583806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 28752839 - 28752899
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataac 198  Q
    |||| |||||||||||||||||||| |||| ||  ||| |||| |||||||||||||||||    
T  28752839 agaataatgttgttcacacttcactcaatggtaagaaataccattaatttaccaatataac 28752899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 9379188 - 9379349
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||| |||||||||||||  ||||| ||||||  |||||||||| ||||||||| ||||||||  ||| |||| |||| ||||||||||||||     
T  9379188 gaagaatgttattcacacttcactcgatgcttgaaaactacagtaatttatcaatataacttcatcggttgttaactgtcgatgaattttaaccggcggc 9379287  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    ||||||||  |||||   | ||| || |||||||||||  |||||||||| |||||||||||    
T  9379288 agttaattatcgatgagaatttatgtctttttctggtgtatttcagccttcttagaagtgta 9379349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 10315699 - 10315829
Alignment:
Q  143 aatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagtt 242  Q
    |||||||||||||||||||| ||||||   |||||||| |||||||| |||||||||||||||| | ||| |||  |||  ||||||||  |||| | ||    
T  10315699 aatgttgttcacacttcactcaatgctgagaaacaccaataatttactaatataacctcatcggcagttaactgccgataaattttaacacgcggcaatt 10315798  T
Q  243 aatttccgatggacaattacgtatttttctg 273  Q
    || | ||||||| || |||||| ||||||||    
T  10315799 aactgccgatgggcatttacgtctttttctg 10315829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 37283816 - 37283757
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataa 197  Q
    |||| |||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||    
T  37283816 agaaaaatgttgttcacacttcactcaatgctaggaaacacgagtaatttatcaatataa 37283757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 22023123 - 22023256
Alignment:
Q  144 atgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatgga-ttttaaccggcggtagtt 242  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| | ||| |||  |||||| ||||||||| ||  ||||    
T  22023123 atgttgttcacacttcactcaatgctggaaaacaccagtaatttacctatataacctcatcggcagttaactgccgatggatttttaaccgacgacagtt 22023222  T
Q  243 aatttccgatggacaattacgtatttttctggtg 276  Q
    || |  ||| |||||||||||| |||| ||||||    
T  22023223 aactgtcgacggacaattacgtcttttactggtg 22023256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 69064 - 68906
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggt 238  Q
    |||||||||||||||||||||||| |||||||| | |||| ||||||||| ||||||||| ||||||||| |||  || ||||| |||||||||| ||      
T  69064 gaagaatgttgttcacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcggtagttaagtg-tgatgaattttaaccgacgac 68966  T
Q  239 agttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    |||||| |  |||| |||| ||||||  |||||| ||| |||||||  |||||||||||||    
T  68965 agttaactgtcgatagacatttacgt-cttttctagtgtgtttcagttttgttagaagtgt 68906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 28108100 - 28108176
Alignment:
Q  139 gaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagct 215  Q
    |||||||||||||||||||||||| | | |||| |||||| ||||||||||||||||||| ||||||| | ||||||    
T  28108100 gaagaatgttgttcacacttcactcagtactaggaaacactagtaatttaccaatataacttcatcggcagttagct 28108176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 36979827 - 36979751
Alignment:
Q  220 atggattttaaccggcggtagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaag 296  Q
    ||||||||||| |||||| | |||||| |||||  ||| |||||| ||||||||||| |||||||| ||||||||||    
T  36979827 atggattttaatcggcggcaattaattgccgattaacatttacgtctttttctggtgtgtttcagctttgttagaag 36979751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 46916085 - 46916026
Alignment:
Q  137 aagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatata 196  Q
    ||||| ||||||||||||| ||||||  ||| ||| ||||||||||||||||||||||||    
T  46916085 aagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaatata 46916026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 25993188 - 25993128
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataac 198  Q
    ||||||||||||||||||||||| | |||| |||||||||  |||||||||  ||||||||    
T  25993188 agaagaatgttgttcacacttcattcaatgttagaaaacataagtaatttataaatataac 25993128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 46878155 - 46878237
Alignment:
Q  150 ttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaacc 232  Q
    ||||||||||||| |||||||| |||||||| |||||||  ||||||| || ||||| | ||| || | |||| |||||||||    
T  46878155 ttcacacttcactcaatgctaggaaacaccaataatttataaatataatcttatcggcagttaactatcgatgaattttaacc 46878237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 33629342 - 33629502
Alignment:
Q  137 aagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcg 236  Q
    |||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||| ||||||  | |||| ||| |||| ||||||  |||  |    
T  33629342 aagaagaatgttgttcacacttcactcaatgctaggaaacaatagtaatttaccaatataatctcatcaat-attaactgctgattgatttttgccgatg 33629440  T
Q  237 gtagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtg 298  Q
    | |||||| |  || | |||| |||||| |||||||| || ||||||||||||||| |||||    
T  33629441 gcagttaactgacgctagacatttacgtctttttctgatgtgtttcagccttgttaaaagtg 33629502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 296
Target Start/End: Original strand, 27176942 - 27177101
Alignment:
Q  137 aagaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcg 236  Q
    ||||| ||||||||| |||||||||| ||| ||| |||||| ||||||||||  |||||||||||||||| | ||| || | |||| ||||||| |||||    
T  27176942 aagaataatgttgtttacacttcactcaatactaaaaaacatcagtaatttattaatataacctcatcggcagttaactatcgatgaattttaatcggcg 27177041  T
Q  237 gtagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaag 296  Q
    | |||||| |  ||||| ||| |||||| |||||||  || ||||||  |||||||||||    
T  27177042 gcagttaactgtcgatgaacatttacgtctttttctaatgtgtttcaatcttgttagaag 27177101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 21610998 - 21611151
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcgg 237  Q
    ||||||||||||||||||||||||| ||| |||||||| || ||||||||| ||||||||| | ||||||| ||| |    |||| |||||||||| ||     
T  21610998 agaagaatgttgttcacacttcactcaatactagaaaatactagtaatttatcaatataactttatcggtagttaacaaccgatgaattttaaccgacga 21611097  T
Q  238 tagttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgtt 291  Q
     |||||| |  ||||| ||| |||||| |||||||  || ||||||||| ||||    
T  21611098 cagttaactatcgatgaacatttacgtctttttctaatgtgtttcagccatgtt 21611151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 2285734 - 2285575
Alignment:
Q  140 aagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggta 239  Q
    |||||||||||||||||||||||||||||||  |||||    ||||||| ||||||||| ||||||  | ||   | | |||| |||||||||| | |||    
T  2285734 aagaatgttgttcacacttcacttaatgctatgaaacattgataatttatcaatataacttcatcgacagttgattatcgatgaattttaaccgacagta 2285635  T
Q  240 gttaatttccgatggacaattacgtatttttctggtgcgtttcagccttgttagaagtgt 299  Q
    ||||| | | |||||||| |||||| |||||||  || |||||| ||||||| |||||||    
T  2285634 gttaactgctgatggacatttacgtctttttctaatgtgtttcaaccttgtttgaagtgt 2285575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 20771614 - 20771677
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctc 201  Q
    ||||| ||||||||||||||||||| |||||||||||| || || |||||| ||||||||||||    
T  20771614 agaaggatgttgttcacacttcactcaatgctagaaaatactagaaatttatcaatataacctc 20771677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 33929996 - 33929923
Alignment:
Q  171 gaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaa 244  Q
    |||||||||||||||||| |||||||  |||||||||| ||| |||  ||||||||||||||||| ||| ||||    
T  33929996 gaaaacaccagtaatttatcaatatactctcatcggtagttaactgccgatggattttaaccggcagtaattaa 33929923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 3445521 - 3445453
Alignment:
Q  138 agaagaatgttgttcacacttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcgg 206  Q
    ||||||||||||||||||||||||  |||||||| ||| || ||||||||| ||||||||  |||||||    
T  3445521 agaagaatgttgttcacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcgg 3445453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 10498236 - 10498118
Alignment:
Q  179 cagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatggacaattacgtatttttctggtgcg 278  Q
    |||||||||||||||||||||||||    | ||| |||| |||| ||||||| ||| || |||||| |  ||||| ||| |||||| |||||||| || |    
T  10498236 cagtaatttaccaatataacctcatttacagttaactgtcgatgaattttaaacggtggcagttaactgtcgatgaacatttacgtctttttctgatgtg 10498137  T
Q  279 tttcagccttgttagaagt 297  Q
    ||||| | || ||||||||    
T  10498136 tttcaactttattagaagt 10498118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 300
Target Start/End: Complemental strand, 33900249 - 33900112
Alignment:
Q  156 cttcacttaatgctagaaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaatttccgatgga 255  Q
    ||||||| |||||| |||||||| ||||||||| ||||||||| ||||||  |       |  |||| |||||||||||||| |||||| | || |||      
T  33900249 cttcactcaatgctcgaaaacactagtaatttaacaatataacatcatcgaca-------gccgatgaattttaaccggcggcagttaactaccaatgag 33900157  T
Q  256 caattacgtatttttctggtgcgtttcagccttgttagaagtgta 300  Q
    || |||||| ||||||||||| ||||| || ||||| ||||||||    
T  33900156 catttacgtctttttctggtgtgtttcggcattgtttgaagtgta 33900112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 34205927 - 34205999
Alignment:
Q  173 aaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccggcggtagttaat 245  Q
    |||||||| |||  || ||||||||| ||||||| | ||| |||| |||||||||||| | ||||||||||||    
T  34205927 aaacaccactaaaatatcaatataacatcatcggcagttacctgtcgatggattttaatcagcggtagttaat 34205999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University