View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4123_low_2 (Length: 619)
Name: NF4123_low_2
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 14597446 - 14597098
Alignment:
| Q |
1 |
tgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgcccaagcgattcggtaat |
100 |
Q |
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| T |
14597446 |
tgaatgtacggatgaagtctgtgaaactacaccggccttgaatgccagtgagtttgatcaagatttagattcaaacttgttgcccaagcgatttggtaat |
14597347 |
T |
|
| Q |
101 |
tcatccatgttggctgatagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtccaggaggtgttctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597346 |
tcatccatgttggctgatagcataccagtcgctgagttccaaggtcgccctcttgcagatcatcctaacgtcaggtatggacgtccaggaggtgttctta |
14597247 |
T |
|
| Q |
201 |
ggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597246 |
ggaaacctcgtgaaccactcgatgctcctacagtagcagaatctgtgtctgtcatttcttgttggtatgtatactttgtcaaacacaaacatataagtca |
14597147 |
T |
|
| Q |
301 |
taaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597146 |
taaaaaatatttttgtacttatatacaatattatatatgaaaagacaac |
14597098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 400 - 609
Target Start/End: Complemental strand, 14597047 - 14596838
Alignment:
| Q |
400 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
499 |
Q |
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| T |
14597047 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcacaatcg |
14596948 |
T |
|
| Q |
500 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596947 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
14596848 |
T |
|
| Q |
600 |
acaggttctg |
609 |
Q |
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|||||||||| |
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| T |
14596847 |
acaggttctg |
14596838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 400 - 609
Target Start/End: Original strand, 14611523 - 14611732
Alignment:
| Q |
400 |
catgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcg |
499 |
Q |
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|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |
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| T |
14611523 |
catgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccg |
14611622 |
T |
|
| Q |
500 |
tggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggcc |
599 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14611623 |
tggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggcc |
14611722 |
T |
|
| Q |
600 |
acaggttctg |
609 |
Q |
| |
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|||||||||| |
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| T |
14611723 |
acaggttctg |
14611732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 607
Target Start/End: Complemental strand, 15417259 - 15417057
Alignment:
| Q |
405 |
aggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggat |
504 |
Q |
| |
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|||||||| || || |||||||||||||| ||| | || ||||||||||| |||||||||||||| || || || || ||| | |||||||| ||||||| |
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| T |
15417259 |
aggtatgaggataaaacagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggat |
15417160 |
T |
|
| Q |
505 |
ggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatcagcaccaattaatcttactgatcgactacaccaggtgctaagatgggccacagg |
604 |
Q |
| |
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|| | || ||||||| | || || |||| || || |||||| ||||||| || ||||| || ||||| ||||||| || ||||||||||| ||||| |
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| T |
15417159 |
ggagatcgatatattgcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacagg |
15417060 |
T |
|
| Q |
605 |
ttc |
607 |
Q |
| |
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||| |
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| T |
15417059 |
ttc |
15417057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 547
Target Start/End: Complemental strand, 12192859 - 12192718
Alignment:
| Q |
406 |
ggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaagacgtggttacagggtaccgcatgcacaatcgtggatg |
505 |
Q |
| |
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|||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || || || || || || ||||| || | ||||||||| | ||||| |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
|
| Q |
506 |
gcgttctgtatattgtgtaaccaagcgagatgcatttcgtgg |
547 |
Q |
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| T |
12192759 |
gaggtctgtgtattgtgtgaccaagagggatgccttccgtgg |
12192718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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