View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4123_low_4 (Length: 542)
Name: NF4123_low_4
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 11526653 - 11527016
Alignment:
| Q |
16 |
atctattgcaatcaaatatgcttttnnnnnnnnntcatttaggttggttaatcaaaatgattttatattatgttatcagaacgatcttttcnnnnnnnnn |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526653 |
atctattgcaatcaaatatgcttttaaaaacaa-tcatttaggttggttaatcaaaatgattttatattatgttatcagaacgatcttttcaaaaaaaaa |
11526751 |
T |
|
| Q |
116 |
nnnntcttcaaaatctctagacaaattatatttattttaaaagttgtgacaaatgcatccttaatgagcagagttgatttgttttatattgtaccaat-- |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11526752 |
aa---cttcaaaatctctagacaaattatatttattttaaaagttgcgacaaatgcatccttaatgagcagagttaatttgttttatattgtaccaatta |
11526848 |
T |
|
| Q |
214 |
--gttgtgttttgttttttattcatggagtgaagaatctctgactggtatgatcttggttgtttggtgtattatacattggtgttgttttgtatccaagg |
311 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526849 |
atgttgtgttttgtttttgattcatggagtgaagaatctctgactggtatggtcttggttgtttggtgtattatacattggtgttgttttgtatccaagg |
11526948 |
T |
|
| Q |
312 |
cttttagtattattttgtaatgtgtaatgtaaaaaactatcatgtaggtgattatcaaacttcaataa |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526949 |
cttttagtattattttgtaatgtgtaatgtaaaaaactatcatgtaggtgattatcaaacttcaataa |
11527016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 328 - 535
Target Start/End: Original strand, 11527017 - 11527222
Alignment:
| Q |
328 |
gtaatgtgtaatgtaaaaaactatcatgtaggtgattatcaaacttcaataattcttgctgttccattttaattaacgatacattagtatcaattgacga |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
11527017 |
gtaatgtgtaatgtaaaaaactatcatgtaggtgattatcaaacttcaataattcttggtgttgcattttaattaatgatacattactctcaattgacga |
11527116 |
T |
|
| Q |
428 |
tacattattatcaaatttattttcgagtatatatatttcagctattaccaaatatannnnnnncaagcattcattgcattctactattaacaaatatatt |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11527117 |
tacattattatcaaatttattttcgagtatatatatttcagctattagcaaatat--tatttttaagcattcattgcattctaatattaacaaatatatt |
11527214 |
T |
|
| Q |
528 |
tcatctca |
535 |
Q |
| |
|
||| |||| |
|
|
| T |
11527215 |
tcagctca |
11527222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 38088379 - 38088279
Alignment:
| Q |
266 |
ttggttgtttggtgtattatacattggtgttgttttgtatccaaggcttttagtattattttgtaatgtgtaatgtaaaaaactatcatgtaggtgatta |
365 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
38088379 |
ttggttgtttggtgtatt-tacattggtgttgttttgtatccggggcttttagtattatgtcgtaatgcgtaatgtaaaaaactatcatgcaggtggtta |
38088281 |
T |
|
| Q |
366 |
tc |
367 |
Q |
| |
|
|| |
|
|
| T |
38088280 |
tc |
38088279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 38088260 - 38088154
Alignment:
| Q |
350 |
atcatgtaggtgattatcaaacttcaataattcttgctgttccattttaattaacgatacattagtatcaattgacgatacattattatcaaatttattt |
449 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
38088260 |
atcatgtagatgattatcaaacttcaataattcttggtgttgcattt-aattaatgatatattattatcaattgacgatatattattatcaaatttcttt |
38088162 |
T |
|
| Q |
450 |
tcgagtat |
457 |
Q |
| |
|
|| ||||| |
|
|
| T |
38088161 |
tcaagtat |
38088154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 38088464 - 38088415
Alignment:
| Q |
163 |
gacaaatgcatccttaatgagcagagttgatttgttttatattgtaccaa |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
38088464 |
gacaaatgcatccttaatttgtagagttgatttgttttctattgtaccaa |
38088415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University