View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4123_low_7 (Length: 424)
Name: NF4123_low_7
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 43206991 - 43206566
Alignment:
| Q |
1 |
actgctctttagttttagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatatttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43206991 |
actgctctttagttttagttagtttatttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatacttatg |
43206892 |
T |
|
| Q |
101 |
agttaaaaaattgtattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtata----caaaataggaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43206891 |
agttaaaaaattgtattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtatatacacaaaataggaa |
43206792 |
T |
|
| Q |
197 |
gcctatgctaactattgtgtactaactagtacaatagcacttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaac |
296 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
43206791 |
gcctatgctaactattgtgtactaactagtagaatagcacttgaactcaagtagcttgctaagcaagttacatagtctataatagaaatcaaagagaaac |
43206692 |
T |
|
| Q |
297 |
tcctatatattgtaataaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206691 |
tcctatatattgtaataaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaa |
43206592 |
T |
|
| Q |
397 |
tattagtcacaagaagaataatctac |
422 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
43206591 |
tattagtcacaagaagaataatctac |
43206566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 411
Target Start/End: Complemental strand, 17206193 - 17206091
Alignment:
| Q |
309 |
taataaactgtatattgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcggttgcctatttgagtttgtaa-tattagtcaca |
407 |
Q |
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||||||| |||||| | ||| |||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||| || ||||| | ||||||||| |
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| T |
17206193 |
taataaattgtatactacatttcttaaagcttggttttttgtttt-atcttttatctattttattcagttgcctatttgtgtgtgtaattcttagtcaca |
17206095 |
T |
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| Q |
408 |
agaa |
411 |
Q |
| |
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|||| |
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| T |
17206094 |
agaa |
17206091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 18832229 - 18832153
Alignment:
| Q |
237 |
ttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaata |
313 |
Q |
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|||||||| ||| |||||||| ||||||||||||||| | | || ||| |||||||||||||| || |||||||||| |
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| T |
18832229 |
ttgaactctagtggcttgctatgcaagttacatagtctaaactaaaaaacaaagagaaactccgatttattgtaata |
18832153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 18835497 - 18835568
Alignment:
| Q |
114 |
tattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtata |
185 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||| | | ||| ||||| ||| | |||||||| |
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|
| T |
18835497 |
tattatgaattgagagaagtgaatgaatactcattgtttgattgactagaatggttccgtatatcatgtata |
18835568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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