View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4123_low_8 (Length: 421)
Name: NF4123_low_8
Description: NF4123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4123_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 79 - 409
Target Start/End: Complemental strand, 11044561 - 11044231
Alignment:
| Q |
79 |
caatgtaggctgcaggtattcccaaaaagcttgctccaactattggcatttccattgatcatcgccgcaagaaccgatcgttggaaggtctgcaagccaa |
178 |
Q |
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| T |
11044561 |
caatgtaggctgcaggtattcccaaaaagcttgctccaactatcggcatttccatcgatcatcgccgcaagaaccgatcgttggaaggtctgcaagccaa |
11044462 |
T |
|
| Q |
179 |
cgtccagaggctgaagacatacaaggccaagttggttgtcttcccacgtcgtgcacgcaaggtcaaggtatgcttttaatatatggcctttttcttaatt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11044461 |
cgtccagaggctgaagacatacaaggccaagttggttgtcttcccacgtcgtgcacgcaaggtcaaggtatgcttttaatatatggcctttttcttaatt |
11044362 |
T |
|
| Q |
279 |
ttcgtaacatcattgctgataaatttgaaaaagaaaaggttgtgcattattcttaatttcttatggccctattttttacttccaggctggtgattccact |
378 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11044361 |
ttcgtaccatcattgctgataaatttgaaaaagaaaaggttgtgcattattcttaatttcttatggccctattttttatttccaggctggtgattccact |
11044262 |
T |
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| Q |
379 |
cccgaggaactagcaaatgctacacaggttc |
409 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
11044261 |
cccgaggaactagcaaatgctacacaggttc |
11044231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 80 - 409
Target Start/End: Original strand, 45810470 - 45810817
Alignment:
| Q |
80 |
aatgtaggctgcaggtattcccaaaaagcttgctccaactattggcatttccattgatcatcgccgcaagaaccgatcgttggaaggtctgcaagccaac |
179 |
Q |
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| T |
45810470 |
aatgtagtctgcaggtattcccaaaaagcttgctccaactattggcatttctgtcgatcatcgccgcaagaaccgatcattggaaggtctgcaagccaac |
45810569 |
T |
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| Q |
180 |
gtccagaggctgaagacatacaaggccaagttggttgtcttcccacgtcgtgcacgcaaggtcaagg------------------tatgcttttaatata |
261 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| |
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| T |
45810570 |
gtgcagaggctgaagacatacaaggccaagttggttgtcttcccaagacgtgcacgcaaggtcaaggtaatgcaaattgcggctatattcttttaatata |
45810669 |
T |
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| Q |
262 |
tggcctttttcttaattttcgtaacatcattgctgataaatttgaaaaagaaaaggttgtgcattattcttaatttcttatggccctattttttacttcc |
361 |
Q |
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|| |||||| ||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||| |
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| T |
45810670 |
tgaccttttccttaattttggtactgtcattgctaataaatttgaaaaagaaaaagttgtgcattattcttaatttcttacggccctgttttttatttcc |
45810769 |
T |
|
| Q |
362 |
aggctggtgattccactcccgaggaactagcaaatgctacacaggttc |
409 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45810770 |
aggctggtgattccactcctgaggaactagcaaatgctacacaggttc |
45810817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 85 - 248
Target Start/End: Original strand, 6902312 - 6902475
Alignment:
| Q |
85 |
aggctgcaggtattcccaaaaagcttgctccaactattggcatttccattgatcatcgccgcaagaaccgatcgttggaaggtctgcaagccaacgtcca |
184 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| || |||||||| |||| ||||||||||||||||| || ||||| ||||||||||| || || || |
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| T |
6902312 |
aggctgcaggtatccccaagaagcttgctccaaccatcggcatttctgttgaccatcgccgcaagaaccgttctttggagggtctgcaagctaatgtgca |
6902411 |
T |
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| Q |
185 |
gaggctgaagacatacaaggccaagttggttgtcttcccacgtcgtgcacgcaaggtcaaggta |
248 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| | || ||||||||| ||||||| |
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| T |
6902412 |
gaggctgaaaacatacaaggccaagttggttgttttcccaaggcgcgcacgcaagaccaaggta |
6902475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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